Locus 4315

Sequence ID X_DroMel_CAF1
Location 11,371,205 – 11,371,306
Length 101
Max. P 0.648128
window7093

overview

Window 3

Location 11,371,205 – 11,371,306
Length 101
Sequences 5
Columns 107
Reading direction forward
Mean pairwise identity 83.40
Mean single sequence MFE -22.20
Consensus MFE -13.06
Energy contribution -12.82
Covariance contribution -0.24
Combinations/Pair 1.08
Mean z-score -2.13
Structure conservation index 0.59
SVM decision value 0.24
SVM RNA-class probability 0.648128
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11371205 101 + 22224390
AGGCAAUUAAGA--UA----UCUUUCACUGCAUUUGCCUAUCAAAGAAAACCGCAAUCAUAGUUGCACAACUAUGAGAAGCCCUUUUCAAGUGUUGUGCAAAAACUU
((((((...((.--..----.......))....)))))).......................(((((((((..((((((....))))))...)))))))))...... ( -23.40)
>DroSec_CAF1 31954 94 + 1
AGGCAAUUAACA----------UUUCACUGCAUUUGCCUAUCGGAA-AAACCGCAAUCAUAGUUGCACAACUAUGAGAAGCCCUUUUCAAGUGUU--GCCGAAACUU
((((((....((----------......))...)))))).((((..-.(((.((..((((((((....))))))))((((....))))..)))))--.))))..... ( -23.00)
>DroSim_CAF1 13206 99 + 1
AGGCAAUUAAGA--UA----UCUUUCACUGCAUUUGCCUAUCAGAAAAAACCGCAAUCAUAGUUGCACAACUAUGAGAAGCCCUUUUCAAGUGUU--GCCGAAACUU
.(((((..(((.--..----.))).((((((....))......(((((....((..((((((((....))))))))...))..))))).))))))--)))....... ( -22.50)
>DroEre_CAF1 35806 102 + 1
AGGUAAUUUAAAUAUACACGUAUUUAAGUGCUUUUGCCUAUCAUAA-AAGC--CAAUCAUAGUUGCACAACUAUGAGUAGCCCUUUUCAAGUGUU--GCAGAAACUU
.....((((((((((....))))))))))(((((((.......)))-))))--...((((((((....))))))))(((((.((.....)).)))--))........ ( -22.30)
>DroYak_CAF1 37213 98 + 1
UGGUAAUU-AAGGAUA----UCUUUCACUGCUUUUGCCCAUUAUAA-GAGC-CCAAUCAUAGUUGCACAACUAUGAGAAGCCCUUUUUAAGUGUU--GCAGAAACUU
..(((.(.-((((...----.)))).).)))((((((.((((..((-(.((-....((((((((....))))))))...)).)))....))))..--)))))).... ( -19.80)
>consensus
AGGCAAUUAAAA__UA____UCUUUCACUGCAUUUGCCUAUCAGAA_AAACCGCAAUCAUAGUUGCACAACUAUGAGAAGCCCUUUUCAAGUGUU__GCAGAAACUU
.(((.........................((....))...................((((((((....))))))))...)))......................... (-13.06 = -12.82 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:57 2006