Locus 4314

Sequence ID X_DroMel_CAF1
Location 11,370,661 – 11,370,781
Length 120
Max. P 0.696104
window7092

overview

Window 2

Location 11,370,661 – 11,370,781
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 83.16
Mean single sequence MFE -30.18
Consensus MFE -20.26
Energy contribution -22.58
Covariance contribution 2.32
Combinations/Pair 1.07
Mean z-score -1.88
Structure conservation index 0.67
SVM decision value 0.34
SVM RNA-class probability 0.696104
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11370661 120 + 22224390
AGCUUAGAACUUGGCCCUUUAAGUCUAUUAUCUGGCAUAAUCUAUGUGUUUUCUAACUAAGCGAAGGAUAUUACCUUUUCUUUUCUUUUUUUUUGCCAGGUGUAAAAAGAGGGUUAGGUG
........((((((((((((........(((((((((..........(((....))).(((.(((((......))))).)))...........))))))))).....)))))))))))). ( -32.12)
>DroSec_CAF1 31302 117 + 1
AGCUUAGAACUUGGCCCUUUAAACCUAUUAUCUGGCAUAAUCUUGGUGUUUUCUAAGUUAGCGAGGGAUAUUACCAAUUUUUUUCUU---UUUUGCCAGGUGUAAAAAGAGGGUUAGGUG
........((((((((((((........(((((((((.((..((((((...(((..(....)...)))...))))))..))......---...))))))))).....)))))))))))). ( -33.72)
>DroSim_CAF1 12556 117 + 1
AGCUUAGAACUUGGCCCUUUAAGCCUAUUAUCUGGCAUAAUCUUGGUGUUUUCUAAGUCAGCGAGGGAUAUUACCAAUUUUUUUCUU---UUUUGCCAGGUGUAAAAAGAGGGUUAGGCG
.((((((..((((((.......)))...(((((((((.((..((((((...(((..(....)...)))...))))))..))......---...)))))))))......)))..)))))). ( -32.30)
>DroEre_CAF1 35069 104 + 1
AGCUCAGAACUUGCCCCUUUAAACCUAUUAUCUGGCAUAAUCUUGGUGUUUUCCAAGUUGGAGA----GAUUACCU---------UU---UUUUGCAAGGUGUAAAAAGAGGAAUGGGUG
......................(((((((((((..(.(((.(((((......)))))))))..)----)))..(((---------((---((((((.....)))))))))))))))))). ( -27.70)
>DroYak_CAF1 36483 105 + 1
AGCUCAGAACUUGGCCCUUUAAACCGAUUAUCUGGCAUAAUCUUGGUGUUUUCUAAGUUGGAGA----GAUUACCU--------CUU---UUUUGCAAGGUGUAUGAAGAGGGAUAGGUG
........(((((.((((((........(((((.(((.......((((.(((((.......)))----)).)))).--------...---...))).))))).....)))))).))))). ( -25.06)
>consensus
AGCUUAGAACUUGGCCCUUUAAACCUAUUAUCUGGCAUAAUCUUGGUGUUUUCUAAGUUAGCGA_GGAUAUUACCU_UU_UUUUCUU___UUUUGCCAGGUGUAAAAAGAGGGUUAGGUG
........((((((((((((........(((((((((....(((((......)))))........((......))..................))))))))).....)))))))))))). (-20.26 = -22.58 +   2.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:57 2006