Locus 4311

Sequence ID X_DroMel_CAF1
Location 11,368,113 – 11,368,213
Length 100
Max. P 0.985435
window7087

overview

Window 7

Location 11,368,113 – 11,368,213
Length 100
Sequences 3
Columns 100
Reading direction forward
Mean pairwise identity 79.64
Mean single sequence MFE -17.73
Consensus MFE -16.91
Energy contribution -16.47
Covariance contribution -0.44
Combinations/Pair 1.10
Mean z-score -1.19
Structure conservation index 0.95
SVM decision value 2.01
SVM RNA-class probability 0.985435
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11368113 100 + 22224390
UAUUAUUUAAUCUCUGUUGGUUGCUUGUAAGUUUCUCUAGCCAUAUUGUAUCUCAAGUCCUGCAGAUACUAGAUCUCUAAAGUUAGGGAAAAAUGUUAAG
.......(((((......)))))((((....((((((((((......((((((((.....)).))))))(((....)))..)))))))))).....)))) ( -20.20)
>DroSec_CAF1 28848 75 + 1
UAUUA-------------------------GUUUCUCUAGCCAUAUUGUAUCUCAAGUCCUGCGGAUACUAGAUCUCUAAAGUUAGGGGAAAAUGUUAAG
.....-------------------------.((((((((((......((((((((.....)).))))))(((....)))..))))))))))......... ( -16.00)
>DroSim_CAF1 10094 75 + 1
UAUUA-------------------------GUUUCUCUAGCCAGAUUGUAUCUCAAGUCCUGCGGAUACUAGAUCUCUAAAGUUAGGGGAAAAUGUUAAG
.....-------------------------.((((((((((.(((((((((((((.....)).))))))..))))).....))))))))))......... ( -17.00)
>consensus
UAUUA_________________________GUUUCUCUAGCCAUAUUGUAUCUCAAGUCCUGCGGAUACUAGAUCUCUAAAGUUAGGGGAAAAUGUUAAG
...............................((((((((((......((((((((.....)).))))))(((....)))..))))))))))......... (-16.91 = -16.47 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:52 2006