| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 11,367,637 – 11,367,740 |
| Length | 103 |
| Max. P | 0.805930 |
| Location | 11,367,637 – 11,367,740 |
|---|---|
| Length | 103 |
| Sequences | 3 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 84.71 |
| Mean single sequence MFE | -22.07 |
| Consensus MFE | -18.09 |
| Energy contribution | -17.98 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.02 |
| Structure conservation index | 0.82 |
| SVM decision value | 0.63 |
| SVM RNA-class probability | 0.805930 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11367637 103 - 22224390 CUAUUUUGCAUAGCAGUUG------------CAAUUAUAAUGAAUAAUUAAUACAAAUAGAUAAGGUGCACAGUGUAUAGAGAUAGACAACUAUACUCUAUAUAUUUUAAUCAAU ((((((.(((.......))------------)((((((.....)))))).....))))))....(((....(((((((((((((((....)))).)))))))))))...)))... ( -20.90) >DroSec_CAF1 28405 110 - 1 UCAUUUUGCAUAGCAGUUGAGGAGCUUUUAGAAAUUAUAAUGAAUA----AUACAAAUAGAUAAGCUGCACAGUGUAUGGAGAUAGACAACUAUACUCUAUACAUUU-CAUUGAU (((..((((...)))).)))(.((((((((...(((((.....)))----)).....))))..)))).)..(((((((((((((((....)))).))))))))))).-....... ( -22.90) >DroSim_CAF1 9638 110 - 1 UCAUUUUGCAUAGCAGUUGAGGAGCUUUUAGAAAUUAUAAUGAAUA----AUACAAAUAGAUAAGCUGCACAGUGUAUGGAGAUAGACAACUAUACUCUAUAUAUUU-AAUUGAU .............((((((((.((((((((...(((((.....)))----)).....))))..)))).)...((((((((((((((....)))).))))))))))))-))))).. ( -22.40) >consensus UCAUUUUGCAUAGCAGUUGAGGAGCUUUUAGAAAUUAUAAUGAAUA____AUACAAAUAGAUAAGCUGCACAGUGUAUGGAGAUAGACAACUAUACUCUAUAUAUUU_AAUUGAU ............((((((.............................................))))))..(((((((((((((((....)))).)))))))))))......... (-18.09 = -17.98 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:51 2006