Locus 4309

Sequence ID X_DroMel_CAF1
Location 11,364,426 – 11,364,545
Length 119
Max. P 0.577090
window7085

overview

Window 5

Location 11,364,426 – 11,364,545
Length 119
Sequences 4
Columns 119
Reading direction forward
Mean pairwise identity 95.93
Mean single sequence MFE -30.33
Consensus MFE -27.65
Energy contribution -28.03
Covariance contribution 0.38
Combinations/Pair 1.07
Mean z-score -1.54
Structure conservation index 0.91
SVM decision value 0.09
SVM RNA-class probability 0.577090
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11364426 119 + 22224390
CCCAAUUAUGAAAUGGAAAAGCGCCGCCGAGCUGAGGAAAACCCAGCAGCAUACUAAAUGGGGACAACGAGGCGUAUGAUUUAUGUGUUAGCGAGCGAAUGAAUCAAUGGUUAAACGAA
.(((................(((((..((.((((.((....))))))...........((....)).)).))))).((((((((.((((....)))).)))))))).)))......... ( -31.80)
>DroSec_CAF1 25248 118 + 1
CCCAAUUAUGAAAUGGAAAAGCGCCGGCGAGCUGAGGAAAACCCAGCAGCAUACUAAAUGG-GACAACGAGGCGUAUGAUUUAUGUGCUAGCGAGCGAAUGAAUCAAUGGUUAAACGAA
.(((................(((((..((.((((.((....))))))..(((.....))).-.....)).))))).((((((((.((((....)))).)))))))).)))......... ( -31.50)
>DroEre_CAF1 28922 118 + 1
CCCAAUUAUGAAAUGGAAAAGCGCCGGCGAUCUGAGGAAAACCCAGCAGCAUAU-AAAUGGGGACAACGAGGCGUAUGAUUUAUGUGUUAGCGAGCAAAUGAAUCAAUGGUUAAACGAA
.(((................(((((.((...(((.((....)))))..))....-...((....))....))))).((((((((.((((....)))).)))))))).)))......... ( -29.60)
>DroYak_CAF1 30431 118 + 1
CCCAAUUAUGAAAUGGAAAAGCGCCGGCGAUCCGAGGAAAACCCAGCAGCAUGC-AAAUGGGGACAACGAGGCGUAUGAUUUAUGUGUUAGCGAGCGAAUGAAUCAAUGGUUAAACGAA
.(((................(((((..((.((....))...((((((.....))-...)))).....)).))))).((((((((.((((....)))).)))))))).)))......... ( -28.40)
>consensus
CCCAAUUAUGAAAUGGAAAAGCGCCGGCGAGCUGAGGAAAACCCAGCAGCAUAC_AAAUGGGGACAACGAGGCGUAUGAUUUAUGUGUUAGCGAGCGAAUGAAUCAAUGGUUAAACGAA
.(((................(((((..((.((((.((....))))))...........((....)).)).))))).((((((((.((((....)))).)))))))).)))......... (-27.65 = -28.03 +   0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:50 2006