Locus 4302

Sequence ID X_DroMel_CAF1
Location 11,351,740 – 11,351,839
Length 99
Max. P 0.986853
window7072

overview

Window 2

Location 11,351,740 – 11,351,839
Length 99
Sequences 6
Columns 105
Reading direction forward
Mean pairwise identity 74.30
Mean single sequence MFE -33.02
Consensus MFE -17.48
Energy contribution -18.40
Covariance contribution 0.92
Combinations/Pair 1.26
Mean z-score -2.42
Structure conservation index 0.53
SVM decision value 2.06
SVM RNA-class probability 0.986853
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11351740 99 + 22224390
GAUGCAACCAAGCAAAGC---GCAAGAAGAGCGGAGAAUCGGAGAUGGCAUCGUACCGUCUCUUUCUCGG-CUUCUUGUUAACCCUCUCGUACGCAAAC--CAUU
..(((......)))..((---((((((..(((.(((((..((((((((.......))))))))))))).)-))))))))..((......))..))....--.... ( -30.40)
>DroPse_CAF1 13411 97 + 1
GAUGCACCCAAGCCGAACCGAGAACGAAGA--GGAGGAAGCCAGAUGGUAAAUAGCCAGAUCGCUCUCUGCCUUCUCGCUGAAUCGCUCUUGG----GG--CAUU
(((((.((((((.(((..(.((..(((..(--((((..(((.(..((((.....))))..).)))..)).)))..))))))..)))..)))))----))--)))) ( -36.10)
>DroSec_CAF1 12690 99 + 1
GAUGCAACCAAGCAAAGC---GCAAGAAGAGCGGAGAAUCGGAGAUGGCAUCGUGCCGUCUCUUUCUCGG-CUUCUUGUUAACCAUCUCGUACGCAAAC--CAUU
..(((......)))..((---((((((..(((.(((((..(((((((((.....)))))))))))))).)-))))))))..((......))..))....--.... ( -34.80)
>DroEre_CAF1 16327 99 + 1
GAUGCAACCAAGCAAAGC---ACAAGAAGAGCGGAGAAUCGGAGAUGGCAUCAUGCCGUCUCUUUCUCGG-CUUCUUGUUAACCCUCUCUUAUCCAAAC--CAUU
..(((......)))....---((((((..(((.(((((..(((((((((.....)))))))))))))).)-))))))))....................--.... ( -33.60)
>DroYak_CAF1 16798 101 + 1
GAUGCAACCAAGCAAAGC---GCAAGAAGAGCGGCGAAUCGGAGAUGGCAUCGUGCCGUCUCUUUCUCGG-CUUCCUGUUAACCAUCUCUUACCCAAACCCCAUU
((((.(((.((((....(---((.......))).(((...(((((((((.....)))))))))...))))-)))...)))...)))).................. ( -27.10)
>DroPer_CAF1 13296 97 + 1
GAUGCACCCAAGCCGAACCGAGAACGAAGA--GGAGGAAGCCAGAUGGUAAAUAGCCAGAUCGCUCUCUGCCUUCUCGCUGAAUCGCUCUUGG----GG--CAUU
(((((.((((((.(((..(.((..(((..(--((((..(((.(..((((.....))))..).)))..)).)))..))))))..)))..)))))----))--)))) ( -36.10)
>consensus
GAUGCAACCAAGCAAAGC___GCAAGAAGAGCGGAGAAUCGGAGAUGGCAUCGUGCCGUCUCUUUCUCGG_CUUCUUGUUAACCCUCUCUUAC_CAAAC__CAUU
...((......))........(((.((((....(((((..(((((((((.....))))))))))))))...)))).))).......................... (-17.48 = -18.40 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:38 2006