| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 11,348,534 – 11,348,625 |
| Length | 91 |
| Max. P | 0.651316 |
| Location | 11,348,534 – 11,348,625 |
|---|---|
| Length | 91 |
| Sequences | 4 |
| Columns | 92 |
| Reading direction | forward |
| Mean pairwise identity | 88.71 |
| Mean single sequence MFE | -20.40 |
| Consensus MFE | -17.00 |
| Energy contribution | -17.88 |
| Covariance contribution | 0.88 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.83 |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.651316 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11348534 91 + 22224390 ACCCAUCCGAUAUCUAAUCGAUGGUCAGGGCAAUUAGUCUGCUUAUCGCUCGAGCGAUAA-AAACUCUGGCCGAGAAAAAUACGUAAACUGC .......((((.....)))).(((((((((((.......)))(((((((....)))))))-....))))))))................... ( -22.30) >DroSec_CAF1 9513 91 + 1 ACCCAUCCGAUAUCUAAUCGAUGGUCAGGUCAAUUAGUCUGCUUAUCGCUCGAGCGAUAA-AAACUCUGGCCGAUAAUAAUACGUAAACUAU ..(((((.(((.....))))))))...(((((...(((....(((((((....)))))))-..))).))))).................... ( -21.50) >DroEre_CAF1 13125 92 + 1 ACCCAUCCGAUAUCUAAUCGAUGGUCAGGGCAAUUAGUCUGCUUAUCGCUAAAGCAACAAAAAACGCUGCCCGAUAAUAAUAUGAAAACAAG ..(((((.(((.....))))))))...((((..(((((.........)))))(((..........))))))).................... ( -17.90) >DroYak_CAF1 13538 91 + 1 ACCCAUCUGAUAUCUAAUCGAUGGUCAGGGCAAUUAGUCUGCUUAUCGCCAAAGCGAUAA-AAACGUUGGCCGAUAAUAAUACGAAAACGAG ..(((((.(((.....))))))))...((.((((..((....(((((((....)))))))-..)))))).)).................... ( -19.90) >consensus ACCCAUCCGAUAUCUAAUCGAUGGUCAGGGCAAUUAGUCUGCUUAUCGCUAAAGCGAUAA_AAACGCUGGCCGAUAAUAAUACGAAAACUAG ..(((((.(((.....))))))))...(((((....((....(((((((....)))))))...))..))))).................... (-17.00 = -17.88 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:35 2006