Locus 4299

Sequence ID X_DroMel_CAF1
Location 11,344,347 – 11,344,439
Length 92
Max. P 0.613006
window7068

overview

Window 8

Location 11,344,347 – 11,344,439
Length 92
Sequences 3
Columns 92
Reading direction forward
Mean pairwise identity 86.23
Mean single sequence MFE -20.70
Consensus MFE -14.86
Energy contribution -14.87
Covariance contribution 0.01
Combinations/Pair 1.15
Mean z-score -2.09
Structure conservation index 0.72
SVM decision value 0.16
SVM RNA-class probability 0.613006
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11344347 92 + 22224390
UCAGUUCUGUAUAAUGUCGACGAGACAUGGAAAGCCCCAUCGCGACAUGCGAUGAAAAGCAAGCAAACUCUUCAGACCAAAAACAGACAAAU
...((.((((.....(((((.(((....((.....))((((((.....)))))).............))).)).))).....)))))).... ( -20.20)
>DroSec_CAF1 5379 92 + 1
UCAGUUCUGGAAAAUGUCGGCGGGACAUGGAAAACCCCAUCGCGACAUGCGAUGAAAAGCCAGCGAACUCUUCAGACCAAAAACAGACAAAU
...(.((((((...(((.((((((..........)))((((((.....))))))....))).))).....)))))).).............. ( -22.90)
>DroYak_CAF1 9448 85 + 1
UCAGUUCUGGAAAAUGUCGACGGGACAUGGAAA--CUCAUC--GACACUCGAUGAAAACCAAAC--ACUCUUCAGACCAA-AACAGACCAAU
...(.((((......(((((.(((...(((...--.(((((--(.....))))))...)))...--.))).)).)))...-..)))).)... ( -19.00)
>consensus
UCAGUUCUGGAAAAUGUCGACGGGACAUGGAAA_CCCCAUCGCGACAUGCGAUGAAAAGCAAGC_AACUCUUCAGACCAAAAACAGACAAAU
.....((((......(((((.(((....((.....))((((((.....)))))).............))).)).)))......))))..... (-14.86 = -14.87 +   0.01)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:34 2006