Locus 4298

Sequence ID X_DroMel_CAF1
Location 11,341,455 – 11,341,555
Length 100
Max. P 0.554136
window7067

overview

Window 7

Location 11,341,455 – 11,341,555
Length 100
Sequences 4
Columns 101
Reading direction reverse
Mean pairwise identity 88.67
Mean single sequence MFE -21.80
Consensus MFE -19.10
Energy contribution -19.60
Covariance contribution 0.50
Combinations/Pair 1.10
Mean z-score -1.35
Structure conservation index 0.88
SVM decision value 0.04
SVM RNA-class probability 0.554136
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11341455 100 - 22224390
AAAGGAGCACUAUUGCCAAGGAAAAAUUAAACCCGUCUGCAGAAGAACAUUUAGUUCUGCUAAAUAAGGCAAUUUUGGCAAACGGAAUUCCAAGGGAGAA-
...((((..((.(((((((((...........))((((..((.(((((.....))))).)).....))))....)))))))..))..)))).........- ( -22.00)
>DroSec_CAF1 2438 100 - 1
AAA-GAGCACUAUUGCCAAGGAAAAAUAAAACCCGUCUGAAACAGAACAUUUACUUCUGCUAAAUAAGGCAAUUUCGGCAAACGGAAUUCCAAGGGAGUUG
...-(.(((....))))..............(((........(((((.......)))))........((.(((((((.....)))))))))..)))..... ( -18.40)
>DroEre_CAF1 6231 97 - 1
AAA-GCUCACUAUUACCAUGGAAAAAU--AACCCGUCUGCGGCAGAACAUUUGCUUCUGCUAAAUAAGGCAAUUUUGGCA-UCGGAAUUCCAAGGGAGUUG
..(-((((.......((.(((((....--.....((((..((((((((....).))))))).....))))..(((((...-.)))))))))).))))))). ( -22.21)
>DroYak_CAF1 6515 97 - 1
AAA-GAGCACUAUUACCAAGGAAAAAU--AACCCGUCUGCGGCAGAACAUUUAGUUCUGCUAAAUAAGGCAAUUUCGGCA-UCGGAAUUCCAAGGGAGUUA
...-.......................--..(((......((((((((.....))))))))......((.(((((((...-.)))))))))..)))..... ( -24.60)
>consensus
AAA_GAGCACUAUUACCAAGGAAAAAU__AACCCGUCUGCAGCAGAACAUUUACUUCUGCUAAAUAAGGCAAUUUCGGCA_ACGGAAUUCCAAGGGAGUUG
...............................(((......((((((((.....))))))))......((.(((((((.....)))))))))..)))..... (-19.10 = -19.60 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:34 2006