| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 11,320,542 – 11,320,637 |
| Length | 95 |
| Max. P | 0.727179 |
| Location | 11,320,542 – 11,320,637 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 78.18 |
| Mean single sequence MFE | -26.08 |
| Consensus MFE | -11.51 |
| Energy contribution | -12.07 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.33 |
| Structure conservation index | 0.44 |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.727179 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11320542 95 - 22224390 CAAGUAAACGCCCAGAAAGCCGACGGCCAAAAUGGCAUAGAACCAGGUUUUGCCAAUAAAGUUGGUAAACUUUGGUUUCGCUAGGGU-GUU---U--AAAU ....(((((((((.....(((...))).....((((...((((((((.(((((((((...))))))))).)))))))).))))))))-)))---)--)... ( -35.30) >DroGri_CAF1 31222 93 - 1 CAGAUAAACGCCCAAAAAUCCAACGGCCAGAAUCGCAUAGAACCAGGUUUUGCCAAUGAAGUUUGUAAACUUCGGCUUGCCUGCAAG---C---A--AUAA ........................(((.((((((...........)))))))))..(((((((....)))))))(((((....))))---)---.--.... ( -20.50) >DroEre_CAF1 20576 98 - 1 CAAGUAAACGCCCAGAAAGCCCACCGCCAAAAUGGCGUAGAACCAGGUUUUGCCAAUGAAAUUGGUAAACUUUGGUUUCGCUAGGGG-UUCAAAU--AUUU ..............(((..(((...(((.....)))(..((((((((.(((((((((...))))))))).))))))))..)..))).-)))....--.... ( -31.10) >DroWil_CAF1 35166 98 - 1 CAAAUAGACGCCAAGAAAGCCAACAGCCAAAAUGGCAUAGAACCAGGUUUUACCCAUGAAAUUUGUAAACUUGGGUUUGGCUAGAUAGAAA---GCGAUAC ........(((......((((((..(((.....)))......((((((((....((.......)).))))))))..)))))).........---))).... ( -22.36) >DroYak_CAF1 23893 95 - 1 CAAGUAAACGCCGAGAAAGCCCACGGCCAAAAUGGCAUAGAACCAGGUUUUGCCAAUGAAAUUGGUAAACUUUGGUUUGCCUAAAGG-GUU---U--AUUU .((((((((((((.(......).))))......((((...(((((((.(((((((((...))))))))).)))))))))))......-)))---)--)))) ( -31.20) >DroMoj_CAF1 40918 93 - 1 CAGAUAAACACCCAGAAAUCCAACUGCCAGAAUGGCAUAGAACCAGGUCUUGCCGAUGAAGUUUGUGAACUUUGGUUUCGCUGCAAU---C---G--AUAA ............(((.........((((.....))))..(((((.((.....))...((((((....)))))))))))..)))....---.---.--.... ( -16.00) >consensus CAAAUAAACGCCCAGAAAGCCAACGGCCAAAAUGGCAUAGAACCAGGUUUUGCCAAUGAAAUUGGUAAACUUUGGUUUCGCUAGAGG__UC___U__AUAU .........................(((.....)))...((((((((.(((((...........))))).))))))))....................... (-11.51 = -12.07 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:31 2006