Locus 4294

Sequence ID X_DroMel_CAF1
Location 11,318,021 – 11,318,114
Length 93
Max. P 0.764047
window7059

overview

Window 9

Location 11,318,021 – 11,318,114
Length 93
Sequences 3
Columns 109
Reading direction reverse
Mean pairwise identity 78.59
Mean single sequence MFE -27.23
Consensus MFE -16.03
Energy contribution -18.60
Covariance contribution 2.57
Combinations/Pair 1.17
Mean z-score -2.09
Structure conservation index 0.59
SVM decision value 0.51
SVM RNA-class probability 0.764047
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11318021 93 - 22224390
GACUGGUGUUGGUACUUCAAGAUGUAUCUGCAGGUUGGGA--------UACAUUAAAAUGUAUCUACAGAUUGAGAUAUUCGGAUAGCUUAAAAUGUAUCU--------
((((..(((.(((((........))))).))))))).(((--------(((((....))))))))(((..(((((.(((....))).)))))..)))....-------- ( -20.60)
>DroSec_CAF1 21089 109 - 1
GACUGGUGUUGGUACUUUAAGAUGUAUCUGCAGGUUGAGAUAUGCGGGUACUUUAAAAUGUAUCUACAGGUUGAGAUAUGUGGUUACUUUAACAUGUAUCUACAGAUUA
..(((.(((.((((((((.(((.(((((((((..........)))))))))))).))).))))).))).....(((((((((..........))))))))).))).... ( -29.70)
>DroSim_CAF1 18237 109 - 1
GGCUGGUGUUGGUACUUUAAGAUGUAUCUACAGAUUAAGAUAUGCGGGUACCUUGAAAUGUAUCUGCAGGUUGGAAUAUGCGGGUACCUUAAAAUGUAUCUACAGAUUA
......(((.(((((((((((..(((((..((.(((..(((.(((((((((........))))))))).)))..))).))..)))))))))))..))))).)))..... ( -31.40)
>consensus
GACUGGUGUUGGUACUUUAAGAUGUAUCUGCAGGUUGAGAUAUGCGGGUACAUUAAAAUGUAUCUACAGGUUGAGAUAUGCGGAUACCUUAAAAUGUAUCUACAGAUUA
(((....)))(((((.(((((..(((((((((.(((..(((.((.((((((........)))))).)).)))..))).))))))))))))))...)))))......... (-16.03 = -18.60 +   2.57)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:26 2006