Locus 4292

Sequence ID X_DroMel_CAF1
Location 11,305,469 – 11,305,568
Length 99
Max. P 0.513971
window7057

overview

Window 7

Location 11,305,469 – 11,305,568
Length 99
Sequences 5
Columns 102
Reading direction reverse
Mean pairwise identity 87.49
Mean single sequence MFE -23.74
Consensus MFE -15.82
Energy contribution -17.22
Covariance contribution 1.40
Combinations/Pair 1.00
Mean z-score -1.92
Structure conservation index 0.67
SVM decision value -0.04
SVM RNA-class probability 0.513971
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11305469 99 - 22224390
CUCCAAACAAUUUGAACGCUAGCCAUUUUUCGGCUUUUCGCCCAACAACA--CAAAUCAUUUUGCAUGUUCGCGGC-AGCCGCAAAAGGCGAGCCAAAGGUA
..........((((...(((.(((.((((.(((((....((((((((...--((((....))))..)))).).)))-))))).))))))).))))))).... ( -25.50)
>DroSec_CAF1 8966 98 - 1
-UCCAAACAAUUUGAACGCUAGCCAUUUUUCGGCUUUUGGCCCAACAACA--CAAAUCAUUUUGCAUGUUCGCGGC-AGCCGCAAAAGGCGAGCCAAAGUGA
-......((.((((...(((.(((.((((.(((((....((((((((...--((((....))))..)))).).)))-))))).))))))).))))))).)). ( -26.90)
>DroSim_CAF1 10025 99 - 1
CUCCAAACAAUUUGAACGCUAGCCAUUUUUCGGCUUUUGGCCCAACAACA--CAAAUCAUUUUGCAUGUUCGCGGC-AGCCGCAAAAGGCGAGCCAAAGUGA
.......((.((((...(((.(((.((((.(((((....((((((((...--((((....))))..)))).).)))-))))).))))))).))))))).)). ( -26.90)
>DroEre_CAF1 5088 96 - 1
CCCCAAACAAUUUGAACGCCAGCCG-UUUUCGGCUUUU-GCCCAACAACA--CAAAUCAUUUUGCAUGUUCGCGGCGAGCC--AAAGAGCAAAAAAAAAAAA
................(((((((((-....)))))...-((..((((...--((((....))))..)))).)))))).((.--.....))............ ( -19.40)
>DroYak_CAF1 8942 97 - 1
CCCCAAACAAUUUGAACGCCAGCAG-UUUUCGGCUUUUGGCCCAACAACACACAAAUCAUUUUGCAUGUUCGCGGC-AGCC--AAUAGGCAAAAAAAAAAA-
.................(((.((.(-((...(((.....))).)))((((..((((....))))..)))).)))))-.(((--....)))...........- ( -20.00)
>consensus
CUCCAAACAAUUUGAACGCUAGCCAUUUUUCGGCUUUUGGCCCAACAACA__CAAAUCAUUUUGCAUGUUCGCGGC_AGCCGCAAAAGGCGAGCCAAAGAAA
.....................(((.((((.(((((....(((....((((..((((....))))..))))...))).))))).)))))))............ (-15.82 = -17.22 +   1.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:24 2006