Locus 4290

Sequence ID X_DroMel_CAF1
Location 11,302,086 – 11,302,176
Length 90
Max. P 0.990734
window7053

overview

Window 3

Location 11,302,086 – 11,302,176
Length 90
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 80.00
Mean single sequence MFE -29.53
Consensus MFE -19.95
Energy contribution -20.87
Covariance contribution 0.92
Combinations/Pair 1.00
Mean z-score -2.78
Structure conservation index 0.68
SVM decision value 2.23
SVM RNA-class probability 0.990734
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11302086 90 - 22224390
UUCACUGGUGGUUUGAUUUCGACAUCAGGAUCGGAGGAUUCAAUUUCCACAACUGGU------------------------------GAGUUUUCCGUUUUUUUCUCCUUUUUCGUUUGC
.((.((((((..(((....))))))))))).(((((((((((....(((....))))------------------------------))))))))))....................... ( -20.90)
>DroSec_CAF1 5638 120 - 1
UUCGCUGGUGGUUUGAUUUGGUCAUCAGCAUCGGAGGAUUCAAUUUCCACAUCUGGUUGUGGAAGUACACCCUUAACAAUCUCAUUUGAGUUUUCCGUCUUUUUCUCCUUUUUCGUUUGC
...(((((((..(......)..)))))))..((((((((((((((((((((......)))))))))....................)))))))))))....................... ( -33.85)
>DroSim_CAF1 6493 120 - 1
UUCGCUGGUGGUUUGAUUUGGUCAUCAGCAUCGGAGGAUUCAAUUUCCACAUCUGGUUGUGGAAGUACACCCUUAACAAUCUCAUUUGAGUUUUCCGUCUUUUUCUCCUUUUUCGUUUGC
...(((((((..(......)..)))))))..((((((((((((((((((((......)))))))))....................)))))))))))....................... ( -33.85)
>consensus
UUCGCUGGUGGUUUGAUUUGGUCAUCAGCAUCGGAGGAUUCAAUUUCCACAUCUGGUUGUGGAAGUACACCCUUAACAAUCUCAUUUGAGUUUUCCGUCUUUUUCUCCUUUUUCGUUUGC
...(((((((..(......)..)))))))..((((((((((.....(((....)))..(((......))).................))))))))))....................... (-19.95 = -20.87 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:21 2006