Locus 429

Sequence ID X_DroMel_CAF1
Location 1,259,726 – 1,259,838
Length 112
Max. P 0.988372
window662

overview

Window 2

Location 1,259,726 – 1,259,838
Length 112
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 73.99
Mean single sequence MFE -37.04
Consensus MFE -13.31
Energy contribution -14.19
Covariance contribution 0.88
Combinations/Pair 1.24
Mean z-score -2.36
Structure conservation index 0.36
SVM decision value 2.12
SVM RNA-class probability 0.988372
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1259726 112 - 22224390
AUAAUUGUAUGCCAAGCCUCGGCAUUGUUCUCCUUUCCUUCUUUACAUCGA-----AGGGAAGG--GGACG-GGAAGAAGCUUCCAGCCUGGCCCAUGCAACUCCCCCUAGAAGCCAACU
....(((((((....(((..(((..(((((.((((((((((........))-----))))))))--)))))-(((((...))))).))).))).)))))))................... ( -40.40)
>DroPse_CAF1 26007 109 - 1
AUAAUUUUCUGCAAGGCUUUGGCAUUGUUCUGUUCCACUCGCUUACAAGGAGCAGAGAGACAGGGGGGAAGGGACAGCAGCUG----------CUAUGCAACUCCCGCG-AAAGCCAACU
..............((((((.((....(((((((((............))))))))).....(((((....(.(.(((....)----------)).).)..))))))).-)))))).... ( -37.90)
>DroSec_CAF1 13915 112 - 1
AUAAUUGUAUGCCAAGCCUCGGCAUUGUUCUCCUUUCCUUCCUUGCCUCGA-----AAGGAAGG--GGACG-GGAAGAAGCUUCCAGCCUGGCCCAUGCAACUCCCCCUAGAAGCCAACU
....((((((((((.((...(((.((.(((((.(..((((((((.......-----))))))))--..).)-)))).)))))....)).))))..))))))................... ( -37.20)
>DroSim_CAF1 12592 112 - 1
AUAAUUGUAUGCCAAGCCUCGGCAUUGUUCUCCUUUCCUUCCUUGCCUCGA-----AAGGAAGG--GGACG-GGAAGAAGCUUCCAGCCUGGCCCAUGCAACUCCCCCUAGAAGCCAACU
....((((((((((.((...(((.((.(((((.(..((((((((.......-----))))))))--..).)-)))).)))))....)).))))..))))))................... ( -37.20)
>DroPer_CAF1 26277 109 - 1
AUAAUUUUCUGCAAGGUUUUGGCAUUGUUCUGUUCCACUCGCUUACAAGGAGCAGAGAGAAAGGGGGGAAAGGACAGCAGCUG----------CAAUGCAACUCCCGCG-AAAGCCAACU
..............((((((.((....(((((((((............))))))))).....((((((......).(((....----------...)))..))))))).-)))))).... ( -32.50)
>consensus
AUAAUUGUAUGCCAAGCCUCGGCAUUGUUCUCCUUUCCUUCCUUACAUCGA_____AAGGAAGG__GGACG_GGAAGAAGCUUCCAGCCUGGCCCAUGCAACUCCCCCUAGAAGCCAACU
....................(((..(((((..((((((((................))))))))..))))).(((((...)))))............................))).... (-13.31 = -14.19 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:24 2006