Locus 4287

Sequence ID X_DroMel_CAF1
Location 11,287,752 – 11,287,877
Length 125
Max. P 0.998511
window7047 window7048

overview

Window 7

Location 11,287,752 – 11,287,860
Length 108
Sequences 3
Columns 108
Reading direction reverse
Mean pairwise identity 89.74
Mean single sequence MFE -30.57
Consensus MFE -28.74
Energy contribution -28.63
Covariance contribution -0.11
Combinations/Pair 1.07
Mean z-score -1.50
Structure conservation index 0.94
SVM decision value 0.36
SVM RNA-class probability 0.705811
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11287752 108 - 22224390
UAUGUGUGUUUGUAUAUAGUACAUAUGGUGGCUCGAUCCGGCCGAUCCAAUCCGAUCCGGGUUGCGAUCGCUUCCUGUGCGCUUGACACGACAAUUCGUACUGAAACU
((((..(((((((.....(((((...(((((((......))))(((((((((((...))))))).)))))))...))))).....))).))))...))))........ ( -32.70)
>DroEre_CAF1 17496 96 - 1
------------UAUAUACCACAUAUGGCGGCUCGAUCCGGCCGAUCCAAUCCGAUCCGGGUUGCGAUCGCUUCCUGUGCGCUUGACACGACAAUUCGUACUGAAACU
------------.......((((...(((((((......))))(((((((((((...))))))).)))))))...))))........((((....))))......... ( -28.20)
>DroYak_CAF1 18325 96 - 1
------------UAUAUAGUACAUAUGGCGGCUCAAUCCGGCCGAUCCAAUCCGAUCCGGGUUGCGAUCGCUUCCUGUGCGCUUGACACGACAAUUCGUACUGAAACU
------------......(((((...(((((((......))))(((((((((((...))))))).)))))))...))))).......((((....))))......... ( -30.80)
>consensus
____________UAUAUAGUACAUAUGGCGGCUCGAUCCGGCCGAUCCAAUCCGAUCCGGGUUGCGAUCGCUUCCUGUGCGCUUGACACGACAAUUCGUACUGAAACU
..................(((((...(((((((......))))(((((((((((...))))))).)))))))...))))).......((((....))))......... (-28.74 = -28.63 +  -0.11)

alignment

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secondary structure

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dotplot

Postscript

Window 8

Location 11,287,787 – 11,287,877
Length 90
Sequences 3
Columns 90
Reading direction reverse
Mean pairwise identity 77.42
Mean single sequence MFE -24.93
Consensus MFE -20.82
Energy contribution -20.60
Covariance contribution -0.22
Combinations/Pair 1.06
Mean z-score -2.45
Structure conservation index 0.84
SVM decision value 3.13
SVM RNA-class probability 0.998511
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11287787 90 - 22224390
CGAUAUAUCUAUAUAUAUAUGUGUGUUUGUAUAUAGUACAUAUGGUGGCUCGAUCCGGCCGAUCCAAUCCGAUCCGGGUUGCGAUCGCUU
(.((((..(((((((((.((....)).)))))))))...)))).).((((......))))(((((((((((...))))))).)))).... ( -26.90)
>DroEre_CAF1 17531 68 - 1
CGUUGUA----------------------UAUAUACCACAUAUGGCGGCUCGAUCCGGCCGAUCCAAUCCGAUCCGGGUUGCGAUCGCUU
.((.(((----------------------....))).))....(((((((......))))(((((((((((...))))))).))))))). ( -22.80)
>DroYak_CAF1 18360 68 - 1
CGAUGUA----------------------UAUAUAGUACAUAUGGCGGCUCAAUCCGGCCGAUCCAAUCCGAUCCGGGUUGCGAUCGCUU
..(((((----------------------(.....))))))..(((((((......))))(((((((((((...))))))).))))))). ( -25.10)
>consensus
CGAUGUA______________________UAUAUAGUACAUAUGGCGGCUCGAUCCGGCCGAUCCAAUCCGAUCCGGGUUGCGAUCGCUU
...........................................(((((((......))))(((((((((((...))))))).))))))). (-20.82 = -20.60 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:16 2006