Locus 4286

Sequence ID X_DroMel_CAF1
Location 11,282,277 – 11,282,386
Length 109
Max. P 0.589553
window7046

overview

Window 6

Location 11,282,277 – 11,282,386
Length 109
Sequences 6
Columns 115
Reading direction forward
Mean pairwise identity 74.69
Mean single sequence MFE -33.20
Consensus MFE -21.01
Energy contribution -21.15
Covariance contribution 0.14
Combinations/Pair 1.29
Mean z-score -1.22
Structure conservation index 0.63
SVM decision value 0.11
SVM RNA-class probability 0.589553
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11282277 109 + 22224390
UCGUUGGCGUUUUCCAGCUGAUGCGAGACCUCCAAGUAUGAUCGGCGCAGCUGCAUUAGCUCCGUCUGAAUGGCAUAGCUGUAUGAGAAAGA------GGAAAACCACCAGUUUA
...((((.((((((((((((.(((((.((......))....)).)))))))).((((((((..(((.....)))..))))).))).......------)))))))..)))).... ( -30.90)
>DroVir_CAF1 14314 110 + 1
UCGUUGGCAUUCUCCAGUUGGUGUGACACCUCCAGAUAGGAGUGUCGCAGCUGCAUUAGCUCCGUUUGAAUGGCAUAGCUGAGCAAUAGAUAGA----UGCAUAUUA-AAGAUUA
......(((((........(.((((((((.(((.....))))))))))).)(((.((((((((((....))))...))))))))).......))----)))......-....... ( -33.10)
>DroGri_CAF1 20258 108 + 1
UCGUUGGCAUUCUCAAGUUGAUGCGACACCUCCAAAUAGGAGCGUCGAAGCUGCAUUAGCUCCGUUUGAAUGGCAUAGCUGA-CAACAAAUGGA----UGAAAAGGG--AAAUUG
.........(((((..(((((((((((..((((.....)))).)))......))))))))((((((((..((((...)))).-...))))))))----......)))--)).... ( -28.30)
>DroMoj_CAF1 12988 107 + 1
UCGUUGGCAUUCUCCAGCUGAUGCGAGACCUCCAGAUAGGAGCGUCGCAGCUGCAUCAGCUCCGUUUGAAUGGCAUAGCUAAGAAAUAGACAG-------CAUAAAU-GCGAUUA
((((((.(((((...((((((((((.(((((((.....)))).))).....))))))))))......))))).))..(((...........))-------)......-))))... ( -35.10)
>DroAna_CAF1 12532 103 + 1
UCGUUGGCGUUCUCCAGUUGGUGGGAGACCUCCAGGUAGGAUCUCCUCAGCUGCAUCAGCUCCGUUUGAAUGGCAUAGCUGGAGGAGGAGUA------G------AGUUAGUUAG
...(((((....((((.((((.((....)).)))).).)))((((((((((((..(((..((.....)).)))..))))).)))))))....------.------.))))).... ( -34.30)
>DroPer_CAF1 13970 109 + 1
UCGUUGGCAUUCUCCAGCUGGUGCGAGACCUCCAGAUAGGAGCGUCUCAGCUGCAUCAGUUCCGUUUGAAUGGCAUAGCUGGGGGGGAGAAAUAAGGGGGAAA------AGAUUA
((.(((.(.(((((((((((.((((((((((((.....)))).))))).....((((((......))).)))))))))))))))))..)...))).)).....------...... ( -37.50)
>consensus
UCGUUGGCAUUCUCCAGCUGAUGCGAGACCUCCAGAUAGGAGCGUCGCAGCUGCAUCAGCUCCGUUUGAAUGGCAUAGCUGAGCAAGAAAUAG_____GGAAAA_AA__AGAUUA
....((.(((((...((((((((((.(((((((.....)))).))).....))))))))))......))))).))........................................ (-21.01 = -21.15 +   0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:15 2006