Locus 4284

Sequence ID X_DroMel_CAF1
Location 11,276,718 – 11,276,810
Length 92
Max. P 0.949135
window7043

overview

Window 3

Location 11,276,718 – 11,276,810
Length 92
Sequences 5
Columns 94
Reading direction forward
Mean pairwise identity 91.25
Mean single sequence MFE -16.19
Consensus MFE -12.51
Energy contribution -12.75
Covariance contribution 0.24
Combinations/Pair 1.15
Mean z-score -2.35
Structure conservation index 0.77
SVM decision value 1.39
SVM RNA-class probability 0.949135
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11276718 92 + 22224390
CUAUAUUUAAAUGUCUGUUAACUCCUGCUGAUUGUUAAUACUGCCCCUCCCCCAGCAGCCUCCUCUUUUAGCCGCAAACAUAUCAUUUUAUA--
........(((((..((((.....(.(((((..(......((((..........))))......)..))))).)..))))...)))))....-- ( -10.70)
>DroSec_CAF1 6946 94 + 1
CUAUAUUUAAAUGUCUGUUAACUGCUGCUGAUUUUUAAUACUGCCCCUCCCCCAGCAGCCUCCUCUUUUAGCCGCAAACAUAUCAUUAUAUAUA
.(((((...((((..((((...(((.(((((.........((((..........)))).........))))).)))))))...))))..))))) ( -16.07)
>DroSim_CAF1 2914 92 + 1
CUAUAUUUAAAUGUCUGUUAACUGCUGCUGAUUGUUAAUACUGCCCCUCCCCCAGCAGCCUCCUCUUUUAGCCGCAAACAUAUCAUUAUAUA--
.........((((..((((...(((.(((((..(......((((..........))))......)..))))).)))))))...)))).....-- ( -16.20)
>DroEre_CAF1 6827 87 + 1
CUACAUUUAAGUGUCUGUUAACUGCUGCUGAUUGUUAAUACUGC-----CCCCAGCAGCCUCGUCUUUCAGCCGCAGACAUAUCUUUAUAUA--
..........((((((((.....(((((((...((.......))-----...)))))))...((......)).))))))))...........-- ( -20.40)
>DroYak_CAF1 7189 90 + 1
CUAUAUUUAAAUGUCUGUUAACUGCUGCUGAUUGUUAAUACUGCGCC--CCCCAGCAGCCUCGUCUUUCAGCCGCAAAAAUAUCUUUAUAUA--
......................(((.(((((..(......((((...--.....))))......)..))))).)))................-- ( -17.60)
>consensus
CUAUAUUUAAAUGUCUGUUAACUGCUGCUGAUUGUUAAUACUGCCCCUCCCCCAGCAGCCUCCUCUUUUAGCCGCAAACAUAUCAUUAUAUA__
.........((((..((((...(((.(((((.........((((..........)))).........))))).)))))))...))))....... (-12.51 = -12.75 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:11 2006