Locus 4281

Sequence ID X_DroMel_CAF1
Location 11,261,554 – 11,261,674
Length 120
Max. P 0.593301
window7038

overview

Window 8

Location 11,261,554 – 11,261,674
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 80.94
Mean single sequence MFE -39.59
Consensus MFE -24.23
Energy contribution -25.95
Covariance contribution 1.73
Combinations/Pair 1.23
Mean z-score -1.73
Structure conservation index 0.61
SVM decision value 0.12
SVM RNA-class probability 0.593301
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11261554 120 + 22224390
CCCAGACCAUUAUUGCCCAAUGUCAGGAGAUUAACCAUGCUGAAUCCAAUCACCAUGGCGGCGGACACAAAAUGGGCCAGGGUAAUAAUGGUAUAGCGAUCACGAAAAAAUCUGGUCAAA
.....(((((((((((((................(((((.(((......))).))))).(((...((.....)).))).))))))))))))).....(((((.((.....)))))))... ( -37.20)
>DroVir_CAF1 2731 120 + 1
CCCAGGCCGCUGCCGCCGACGGUCAGCAGAUCGAAGAUGCUGAAGCCGAUCACCAUGCUGGCGGACACAAAGUGGGCCAGUGUGAUGAUCGCAUAGCGUUGCCGAAAGAAGUGGGUUAGC
((((....(((((((....))).))))...(((..(((((((..((.(((((.(((((((((..((.....))..))))))))).))))))).)))))))..)))......))))..... ( -50.10)
>DroSec_CAF1 4354 120 + 1
CCCAGACCAUUAUUGCCCAGUGUCAGAAGAUUAACCAUGCUGAAUCCAAUCACCAUGGCGGCGGACACGAAAUGGGCCAGGGUGAUAAUGGUAUAGCGAUCCCGAAAAAAUCUGGUCAAA
.((((((((((((..(((.(((((....(.....(((((.(((......))).)))))...).)))))(........).)))..))))))))....((....)).......))))..... ( -37.30)
>DroEre_CAF1 4491 120 + 1
CCCAGCCCAUUAUUGCCCAUCGCGAGGAGAUUGACCAUGCUGAAUCCAAUCACCAUGGCGGCGGAAACGAAAUGGGCCAGGGUGAUAAUGGUGUAGCGCUCCCGGAAAAAUCUGGCCAAA
....(((((((((..(((.((((.(((.(((((.............))))).)).).))))((....))..........)))..))))))).)).......(((((....)))))..... ( -39.22)
>DroYak_CAF1 3594 120 + 1
CCCAGACCAUUAUUGCCCAGCGUGAGGAGAUUCACCAUGCUGAAUCCAAUCACCAUGGCGGCGGACACGAAAUGAGCCAGUGUGAUAACAGUAUAGCGUUCCCGGAAAAAUCUGGCCAAA
.(((((...........(((((((..(.....)..)))))))..(((.(((((..((((..((....))......))))..)))))(((........)))...)))....)))))..... ( -32.60)
>DroAna_CAF1 3840 120 + 1
CCCAGGCCGAUCCCGCCCACUGUCAGGAGGUUCACCAUGCUGAAGCCAAUCACCAUGGCGGCGGAGACGAAGUGGGCCAGGGUUAUGAUGGCAUAGCGCUGCCGAAAUGAUUUAAUCAAG
(((.((((.((((((((.....((((.(((....)).).)))).((((.......))))))))).)).....).)))).)))((((..(((((......)))))..)))).......... ( -41.10)
>consensus
CCCAGACCAUUAUUGCCCACUGUCAGGAGAUUAACCAUGCUGAAUCCAAUCACCAUGGCGGCGGACACGAAAUGGGCCAGGGUGAUAAUGGUAUAGCGAUCCCGAAAAAAUCUGGUCAAA
.(((((((((((((((((................(((((.(((......))).))))).(((.............))).)))))))))))))....((....)).......))))..... (-24.23 = -25.95 +   1.73)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:07 2006