Locus 4280

Sequence ID X_DroMel_CAF1
Location 11,256,596 – 11,256,693
Length 97
Max. P 0.585431
window7037

overview

Window 7

Location 11,256,596 – 11,256,693
Length 97
Sequences 5
Columns 109
Reading direction reverse
Mean pairwise identity 82.22
Mean single sequence MFE -22.12
Consensus MFE -13.16
Energy contribution -13.60
Covariance contribution 0.44
Combinations/Pair 1.06
Mean z-score -1.90
Structure conservation index 0.59
SVM decision value 0.10
SVM RNA-class probability 0.585431
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11256596 97 - 22224390
UCCUUUUCAGUGCCUUUGAGAAGACAUCUGGAUUUUCUA------------CGAAAUUAUUAUUAUUAACCUGAUCAACCGACAGAACUUCCUUCUUAUCGAGCACCUU
.........(((((..(((((((...(((((.....)))------------.))................(((.((....)))))......)))))))..).))))... ( -17.00)
>DroSec_CAF1 15966 91 - 1
UUCUUUUCGGUGCCUUUGAGAAGACAUCCGGAUUUUCCA------------CGAAAUU------AUUAACCUGAUCAACCGACAGAACCUCCUUCUUAUCGAGCACUUU
........((((((..(((((((......((.....)).------------.......------......(((.((....)))))......)))))))..).))))).. ( -18.90)
>DroSim_CAF1 17066 91 - 1
UUCUUUUCGGUGCCUUUGAGAAGACAUCCGGAUUUUCCA------------CGAAAUU------AUUAACCUGAUCAACCGACAGAACCUCCUUCUUAUCGAGCACUUU
........((((((..(((((((......((.....)).------------.......------......(((.((....)))))......)))))))..).))))).. ( -18.90)
>DroEre_CAF1 15758 103 - 1
UUUUGGUCAGUGGCUUUGAGAAGACAUCUGGAUUUUCCAUGGUGUCCAGUGCGAAGUU------AUUAACCUGAUCAAGCGACACAAUUUCCUUCUUAUCGAGCACCUU
.(((((((((((((((((....(((((((((.....))).)))))).....)))))))------).....))))))))).............................. ( -26.50)
>DroYak_CAF1 16397 103 - 1
UUUUUGUCAGUGCCUUUGAGAAGACAUCUGGAUUUUCCACGGUGUCCAGUGCGAAAUU------AUUAGCCUGGCCAACCGACAGAACCUCCUUCUUAUCCAGCACUUU
........(((((...(((((((.....(((.....)))((((..((((.((......------....))))))...))))..........)))))))....))))).. ( -29.30)
>consensus
UUCUUUUCAGUGCCUUUGAGAAGACAUCUGGAUUUUCCA____________CGAAAUU______AUUAACCUGAUCAACCGACAGAACCUCCUUCUUAUCGAGCACUUU
.........((((...(((((((......((.....))................................(((.((....)))))......)))))))....))))... (-13.16 = -13.60 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:06 2006