Locus 4276

Sequence ID X_DroMel_CAF1
Location 11,246,159 – 11,246,257
Length 98
Max. P 0.522583
window7029

overview

Window 9

Location 11,246,159 – 11,246,257
Length 98
Sequences 5
Columns 99
Reading direction forward
Mean pairwise identity 96.75
Mean single sequence MFE -15.16
Consensus MFE -14.28
Energy contribution -14.48
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.10
Structure conservation index 0.94
SVM decision value -0.02
SVM RNA-class probability 0.522583
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11246159 98 + 22224390
CCAUGCUAA-CUUUCGAUUUUCAUACAUAGAAAUGCAUUUGCUGUAAGAACUAACACAGUUUCAGCAGAAACACAUGCGAAUAACCACUUACCUGCAUA
..((((...-........((((.......))))(((((.((((((..(((((.....)))))..))))...)).)))))...............)))). ( -15.20)
>DroSec_CAF1 5657 98 + 1
CCAUGCUAA-CUUUCGAUUUUCAUACAUAGAAAUGCAUUUGCUGUACGAACUAACACAGUUUCAGCAGAAACACAUGCGAAUAACCACUUACCUGCAUA
..((((...-........((((.......))))(((((((((((...(((((.....))))))))))))......))))...............)))). ( -15.00)
>DroSim_CAF1 6144 98 + 1
CCAUGCUAA-CUUUCGAUUUUCAUACAUAGAAAUGCAUUUGCUGUACGAACUAACACAGUUUCAGCAGAAACACAUGCGAAUAACCACUUACCUGCAUA
..((((...-........((((.......))))(((((((((((...(((((.....))))))))))))......))))...............)))). ( -15.00)
>DroEre_CAF1 5655 98 + 1
CCAUGCUAA-CGUUCGAUUUUCAUACAUAGAAAUGCAUUUGCUGUAAGAUCUAACACAGUUUCAGCAGAAACACAUGCGAUUAACCACUUACCUGCAUA
..((((...-.(((.(((((...((((((((......)))).))))))))).)))...(((((....)))))......................)))). ( -14.10)
>DroYak_CAF1 5648 99 + 1
CCAUGCAAAAUUUUCGAUUUUCAUACAUAGAAAUGCAUUUGCUGUAAGAACUAACACAGUUUCAGCAGAAACACAUGCGAUUAACCACUUACCUGCAUA
..(((((...........((((.......))))(((((.((((((..(((((.....)))))..))))...)).)))))..............))))). ( -16.50)
>consensus
CCAUGCUAA_CUUUCGAUUUUCAUACAUAGAAAUGCAUUUGCUGUAAGAACUAACACAGUUUCAGCAGAAACACAUGCGAAUAACCACUUACCUGCAUA
..((((............((((.......))))(((((((((((...(((((.....))))))))))))......))))...............)))). (-14.28 = -14.48 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:58 2006