Locus 4275

Sequence ID X_DroMel_CAF1
Location 11,242,453 – 11,242,549
Length 96
Max. P 0.853956
window7028

overview

Window 8

Location 11,242,453 – 11,242,549
Length 96
Sequences 5
Columns 96
Reading direction reverse
Mean pairwise identity 89.87
Mean single sequence MFE -23.60
Consensus MFE -18.60
Energy contribution -19.24
Covariance contribution 0.64
Combinations/Pair 1.04
Mean z-score -1.84
Structure conservation index 0.79
SVM decision value 0.80
SVM RNA-class probability 0.853956
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11242453 96 - 22224390
CACAAAGAUCGCUUGAUCAGACUAUAAUGGUCUGAUCCAGAACACAACUCUAGAACACUAGGCGCAACUUUUGAGGGCGGGAUGUUCAAAUCAACA
........(((((((((((((((.....)))))))))(((((......(((((....)))))......))))).))))))(((......))).... ( -24.80)
>DroSec_CAF1 1958 96 - 1
CACAAAGAUCGCUUGAUCAGACUAUAACGGUCUGAUCCAGAACACAACUCUAGAACACUAGGCGCAACUUCGGAGGGCGGGAUGUUCAAAUCAACA
......(((.....(((((((((.....)))))))))..(((((....(((((....)))))(((..(....)...)))...)))))..))).... ( -26.10)
>DroSim_CAF1 2544 96 - 1
CACAAAGAUCGCUUGAUCAGACUAUAAUGGUCUGAUCCAGAACACAACUCUAGAACACUAGGCGCAACUUUGGAGGGCGGGAUGUUCAAAUCAACA
..(((((..(((..(((((((((.....)))))))))............((((....)))))))...)))))..((((.....))))......... ( -24.70)
>DroEre_CAF1 2007 94 - 1
CA--ACGAUCGGGUGAUCAGACUAUAAUAGUCUGAUCCAGAACACAAUUCUAUAACACUAGGCACAACUUUGGAGGGCGGGAUGUUCAAAUCAACA
..--..(((...(.((((((((((...))))))))))).(((((....(((....(.(((((......))))).)....))))))))..))).... ( -21.10)
>DroYak_CAF1 1989 94 - 1
CA--UAGAUUUGGGUAUCAAACUCUAAUGGUCUGAUCCAGAACACAAUUCUAAAACACUAGGCACAACUUUUGAGGGCAGGAUGUUCAAAUCAACA
..--..((((((..((((...((((..((.((((...))))...)).........((..((......))..))))))...))))..)))))).... ( -21.30)
>consensus
CACAAAGAUCGCUUGAUCAGACUAUAAUGGUCUGAUCCAGAACACAACUCUAGAACACUAGGCGCAACUUUGGAGGGCGGGAUGUUCAAAUCAACA
......(((.....(((((((((.....)))))))))..(((((.....((((....))))((.(..(....)..)))....)))))..))).... (-18.60 = -19.24 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:57 2006