Locus 4274

Sequence ID X_DroMel_CAF1
Location 11,242,108 – 11,242,224
Length 116
Max. P 0.753456
window7027

overview

Window 7

Location 11,242,108 – 11,242,224
Length 116
Sequences 5
Columns 116
Reading direction forward
Mean pairwise identity 86.46
Mean single sequence MFE -25.14
Consensus MFE -18.04
Energy contribution -19.56
Covariance contribution 1.52
Combinations/Pair 1.06
Mean z-score -1.98
Structure conservation index 0.72
SVM decision value 0.48
SVM RNA-class probability 0.753456
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11242108 116 + 22224390
UUAAUUACCAAUUCGUUUUUGCAUCUGAAUUGUUUAUACUUAAACUAUUUUGUGCAUUUUUUUUUGGAACCGCUCGAGUGCAUUUAUGGAAUCUAUGGUCUAAUAAAGGCACUUGA
.......((((........(((((..((((.(((((....))))).)))).))))).......))))......((((((((.((((((((........))).))))).)))))))) ( -27.66)
>DroSec_CAF1 1636 108 + 1
UUAAUUGCCAAUUCGUUUUAGCAUCUGAAUUGU-------UAAACUAUUUUGUGCAUUUG-UUUUGGAACCGCUCGAGUGCAUUUAUGGAAUCUAUGGUCUAAUAAAGGCACUUGA
((((.((((.......(((((((.......)))-------))))((((...(((((((((-...((....))..)))))))))..))))..................)))).)))) ( -24.40)
>DroSim_CAF1 2222 108 + 1
UUAAUUGCCAAUUCGUUUUUGCAUCUGAAUUGU-------UAAACUAUUUUGUGCAUUUG-UUUUGGAACCGCUCGAGUGCAUUUAUGGAAUCUAUGGUCUAAUAAAGGCACUUGA
.......((((..((....(((((..((((.(.-------....).)))).)))))..))-..))))......((((((((.((((((((........))).))))).)))))))) ( -24.70)
>DroEre_CAF1 1684 113 + 1
UUAAUUACCAGUUCAUUUUUGCAUUUGAAUUGUUAAUACUUUAACUUUUUUGUGCAUUUG-UUUUUGACCUGCGCGAGUGCAUUUAUGGAAU--ACGGUCCAAUAAAGGCACUUGA
........(((.(((....(((((..(((..(((((....)))))..))).)))))....-....))).)))..(((((((.((((((((..--....))).))))).))))))). ( -28.60)
>DroYak_CAF1 1666 113 + 1
UUAAUUACCAGUUUAUUUUUACAUCUCAAAUGUUUAUACUUUAACUAUUUUGUGCAUUUG-UUUUCGACCUGCUCGAGUGCAUUUAUGGAAU--ACAGUCCAAUAAAGGCACUUGA
..........................(((((((....................)))))))-............((((((((.((((((((..--....))).))))).)))))))) ( -20.35)
>consensus
UUAAUUACCAAUUCGUUUUUGCAUCUGAAUUGUU_AUACUUAAACUAUUUUGUGCAUUUG_UUUUGGAACCGCUCGAGUGCAUUUAUGGAAUCUAUGGUCUAAUAAAGGCACUUGA
.......((((........(((((..((((.(((........))).)))).))))).......))))......((((((((.((((((((........))).))))).)))))))) (-18.04 = -19.56 +   1.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:56 2006