Locus 427

Sequence ID	X_DroMel_CAF1
Location	1,247,752 – 1,247,846
Length	94
Max. P	0.913465

overview

Window 9

Location	1,247,752 – 1,247,846
Length	94
Sequences	5
Columns	94
Reading direction	reverse
Mean pairwise identity	95.32
Mean single sequence MFE	-40.00
Consensus MFE	-34.30
Energy contribution	-34.54
Covariance contribution	0.24
Combinations/Pair	1.03
Mean z-score	-1.65
Structure conservation index	0.86
SVM decision value	1.09
SVM RNA-class probability	0.913465
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1247752 94 - 22224390
CGCGGAAUUGCUUGUGCUGCCGGCAGUGUGGUGGCUAUUGUUGAUGUUUCCGCGCUGAAGGCGUGGCAACUGCAGAGUGGGAGGGGUGCGGCGG
(((.(.(((.(((.(((((((..((((((((..((..........))..))))))))..)))(((....).))..)))).))).))).).))). ( -37.90)
>DroSec_CAF1 1999 94 - 1
CGCUGAGUUGCUUGUGCUGCCGGCAGUGUGGUGGCUAUUGUUGAUGUUUCCGCGCUGAAGGCGUGGCAGCUGCAGAGUGGGCGGGGUGCGGCGG
((((((((((((...((.(((..((((((((..((..........))..))))))))..))))))))))))((.......))......))))). ( -38.60)
>DroSim_CAF1 3223 94 - 1
CGCGGAGUUGCUUGUGCUGCCGGCAGUGUGGUGGCUAUUGUUGAUGUUUCCGCGCUGAAGGCGUGGCAGCUGCAGAGUGGGCGGGGUGCGGCGG
((((.(((((((...((.(((..((((((((..((..........))..))))))))..)))))))))))).).......((.....)).))). ( -37.90)
>DroEre_CAF1 3780 94 - 1
CGCGGAGUUGCUUGUGCUGCCGGCAGUGUGGUUGCUAUUGUUGUUGUUGCCGCGCUGAAGGCGUGGCAGCUGCAAAGUGGGCGGGGUGCGGCGG
(((((......)))))((((((.((.(.((.(..((.((((....((((((((((.....)))))))))).))))))..).)).).)))))))) ( -42.80)
>DroYak_CAF1 3339 94 - 1
CGCGGAGUUGCUUGUGCUGCCGGCAGUGUGGUUGCUAUUGUUGUUGUUGCCGCGCUGCAGGCGUGGCAGCUGCAAAGUGGGCGGGGUGCGGCGG
(((((......)))))((((((.((.(.((.(..((.((((....((((((((((.....)))))))))).))))))..).)).).)))))))) ( -42.80)
>consensus
CGCGGAGUUGCUUGUGCUGCCGGCAGUGUGGUGGCUAUUGUUGAUGUUUCCGCGCUGAAGGCGUGGCAGCUGCAGAGUGGGCGGGGUGCGGCGG
(((..(((((((...((.(((..((((((((..((..........))..))))))))..))))))))))))(((..(....)....))).))). (-34.30 = -34.54 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:21 2006