Locus 4268

Sequence ID X_DroMel_CAF1
Location 11,222,887 – 11,222,986
Length 99
Max. P 0.862593
window7011

overview

Window 1

Location 11,222,887 – 11,222,986
Length 99
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 72.09
Mean single sequence MFE -22.34
Consensus MFE -2.40
Energy contribution -2.84
Covariance contribution 0.44
Combinations/Pair 1.30
Mean z-score -1.85
Structure conservation index 0.11
SVM decision value 0.83
SVM RNA-class probability 0.862593
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11222887 99 - 22224390
AAAUUAACUUUUCUUAAUAGGAAAGUAUUUAGUUAUAGUGAUAAUUAGGU------------U---CAUCUUAAGCUUGAGACU----AUAGGUA--AUAUGAGGGAAACCAACAAGUUG
......((((((((....))))))))..(((.(((((((.....((((((------------(---.......))))))).)))----)))).))--).....((....))......... ( -21.30)
>DroSec_CAF1 10226 100 - 1
AAAUUGACUUUUCUUAAUAGGAAAGUAUUUACUUAUAGUGAUAG-UAGGU------------U---AAUCUUAAGCUUCAGGCU----AUAGGUAGAAUAUGAGGGAAACCAACAAGUUG
...(((((((((((....)))))))).((((((((((((((...-((((.------------.---...))))....))..)))----)))))))))......((....))..))).... ( -25.70)
>DroSim_CAF1 1735 88 - 1
AAAUUAACUUUUCUUAAUAGGAAAGUAUUUAGUUAUAGUGAUAA-UAGGU---------------------------UCAGACU----AUAGGUAGAAUAUGAAAGAAACCAACAAGUUG
......((((((((....)))))))).((((.(((((((((...-.....---------------------------))..)))----)))).))))....................... ( -14.10)
>DroEre_CAF1 10052 118 - 1
AAACUUACUUUUCCUAAUAAG-AAGCAUCUAGCUAUCAUGAUAA-AAGGUAUUGCUAGAUCUUAGGCUUCUUAAGCUUCAGACUACAUAUGUGUAGAUUAUGGGGGAAACCAACAAGUUG
.(((((......((...((((-(((((((((((((((.......-..))))..))))))).....)))))))).........(((((....))))).....))((....))...))))). ( -30.50)
>DroYak_CAF1 1896 115 - 1
AAAUGUACCUUUCUAAAAAAGUAAGCAUCUAGUUAACGUGAUAA-UAGUUAUUGCUAGAUCUUAGACUUCUUAAGCCUCAGACU----UUGGGUAGAACAUGGGAGAAACCAACAAGUUG
...(((....(((((..((((((((.(((((((((((.......-..))))..)))))))))))....(((........)))))----))...)))))..(((......))))))..... ( -20.10)
>consensus
AAAUUAACUUUUCUUAAUAGGAAAGUAUUUAGUUAUAGUGAUAA_UAGGU____________U___CAUCUUAAGCUUCAGACU____AUAGGUAGAAUAUGAGGGAAACCAACAAGUUG
........((((((((..........(((((.((((....)))).)))))...............................(((.......)))......))))))))............ ( -2.40 =  -2.84 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:42 2006