| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 11,221,172 – 11,221,268 |
| Length | 96 |
| Max. P | 0.971915 |
| Location | 11,221,172 – 11,221,268 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 78.93 |
| Mean single sequence MFE | -40.68 |
| Consensus MFE | -24.35 |
| Energy contribution | -26.35 |
| Covariance contribution | 2.00 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.78 |
| Structure conservation index | 0.60 |
| SVM decision value | 1.68 |
| SVM RNA-class probability | 0.971915 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11221172 96 + 22224390 GGAGUGCCUGCUGCC---GCAGAAGAAGGCACAGAUUCGCUGCGACCAAG-ACCAGCCACCUUUGGUGGUCUUGGUACAGCCGUCGGCGGAAGCCAUAGA ...((((((.((...---.....)).)))))).(((..((((..((((((-((((.(((....))))))))))))).)))).)))(((....)))..... ( -47.30) >DroPse_CAF1 9263 93 + 1 GGAGUCCCUGCUGCCAGUGCAGAAGGAGGUGGAGGA-----GAAACCCACAG-CCGC-CCCAGUGGUUGUGUUGCUGCAAACUGAUGAGGAAGCCAUAGA ((..(((...(...((((((((.....(((......-----...)))(((((-((((-....)))))))))...))))..))))..).)))..))..... ( -29.90) >DroSec_CAF1 8537 96 + 1 GGAGUGCCUGCUGCC---GCAGAAGAAGGCACAGAUUCGUUGCGACCAAG-ACCAGCCACCUUUGGUGGUCUUGGUGCAACCGUCGGCGGAAGCCAUAGA ...((((((.((...---.....)).)))))).(((..(((((.((((((-((((.(((....)))))))))))))))))).)))(((....)))..... ( -49.00) >DroSim_CAF1 41 96 + 1 GGAGUGCCUGCUGCC---GCAGAAGAAGGCACAGAUUCGUUGCGACCAAG-ACCAGCCACCUUUGGUGGUCUUGGUGCAACCGUCGGCGGAAGCCAUAGA ...((((((.((...---.....)).)))))).(((..(((((.((((((-((((.(((....)))))))))))))))))).)))(((....)))..... ( -49.00) >DroEre_CAF1 8361 93 + 1 GGAGUGCCUGCUGCC---GCAGAAGAAGGCGCAGUUACAAUCAGC---AG-ACCAGACACCUUUGGUCGUCUUGGUUCAGUCAUCGGCGGAAGCCGUAGA ...(((.((((.(((---.........))))))).)))((((((.---.(-((((((....)))))))...)))))).......((((....)))).... ( -33.10) >DroYak_CAF1 152 93 + 1 GGAGUGCCUGCUCCC---UCAGAAGAAGGCGCAGAUUCGUUCGGA---UG-AGCAGCCACCUUUGGUGGUCUUGGUUCAGCCAUCGGCGGAAGCCAUAGA .((((..((((.((.---((....)).)).))))))))....((.---((-(((.((((((...))))))....))))).))...(((....)))..... ( -35.80) >consensus GGAGUGCCUGCUGCC___GCAGAAGAAGGCACAGAUUCGUUGCGACCAAG_ACCAGCCACCUUUGGUGGUCUUGGUGCAACCGUCGGCGGAAGCCAUAGA ((.((((((.((((....))))....)))))).................(.((((((((((...))))))..)))).)..))...(((....)))..... (-24.35 = -26.35 + 2.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:41 2006