| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 11,213,548 – 11,213,666 |
| Length | 118 |
| Max. P | 0.808778 |
| Location | 11,213,548 – 11,213,666 |
|---|---|
| Length | 118 |
| Sequences | 3 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 77.12 |
| Mean single sequence MFE | -29.97 |
| Consensus MFE | -16.95 |
| Energy contribution | -17.74 |
| Covariance contribution | 0.79 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.16 |
| Structure conservation index | 0.57 |
| SVM decision value | 0.64 |
| SVM RNA-class probability | 0.808778 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11213548 118 - 22224390 CUGACAGCUGUGAACUGUGGAAUUACAAAAAUCGAUGUGUAUUCGAUAGCAAAGCUAUUCGAUACUGGAAAUGCCGUGCAUAUUGCACUGUUUGCACUGUUGUCAUAUUUAAAUGGCA ..(((((.((..(((.(((.............((((((((((((((((((...)))).))))....((.....))))))))))))))).)))..)))))))(((((......))))). ( -33.41) >DroSim_CAF1 11196 109 - 1 GUGACAGCUGUGAACUGUGGAGUUACAAAAAUCGAUGUGUAUUCGAUAGCAAAGCUAUUCGAUACUGGAACAUAUAUACAUAUUGC---------ACUGUUGUCGUAUUUAAAUGGCU ..((((((.(((((((....))))........((((((((((((((((((...)))).)))).............)))))))))))---------)).)))))).............. ( -25.81) >DroYak_CAF1 9373 118 - 1 GUGACAGCUGUGAAUAGUGGAGUAACAGAAAACGAUGUGUAUUCGAUAGAAAAUCCUAUCGAUACUGGAAAUUCUAGAAAUAAUGCACUGUUUGCACUGCUGAUAUAAUCAAAAAGCG ....((((((..(((((((((((((((........))).)))))(((((......)))))....((((.....))))........)))))))..))..))))................ ( -30.70) >consensus GUGACAGCUGUGAACUGUGGAGUUACAAAAAUCGAUGUGUAUUCGAUAGCAAAGCUAUUCGAUACUGGAAAUUCUAUACAUAUUGCACUGUUUGCACUGUUGUCAUAUUUAAAUGGCA .(((((((.(((.....((......)).....((((((((((((((((((...)))).)))).............)))))))))).........))).)))))))............. (-16.95 = -17.74 + 0.79)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:40 2006