Locus 4264

Sequence ID X_DroMel_CAF1
Location 11,206,003 – 11,206,095
Length 92
Max. P 0.882766
window7006

overview

Window 6

Location 11,206,003 – 11,206,095
Length 92
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 77.87
Mean single sequence MFE -23.37
Consensus MFE -12.42
Energy contribution -16.53
Covariance contribution 4.12
Combinations/Pair 1.09
Mean z-score -2.71
Structure conservation index 0.53
SVM decision value 0.92
SVM RNA-class probability 0.882766
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11206003 92 + 22224390
AAACGUAACUCCAUCCCUUUCGUUUUCGUAGAAAAACCUUCUAUAU---AUAAUGACAUCAU-------UAUAUGAUGUUAUGUGUAGAUUAGAAUUCCCAU------------------
..(((((((((................((((((.....))))))((---((((((....)))-------))))))).)))))))..................------------------ ( -16.10)
>DroSec_CAF1 2912 120 + 1
AAACGUAACUCUAUCCCUUUCGUUUCCGUAGGAAAACCUUAUAUAUAAUAAGAUGAUAUGAUAAUAUGAUAUAUGAUGUUAUGUAUAGAUUGGAAUUCCCAUAUGGAAAUGAUAAAAUAA
...................(((((((((((((((..((((((((((((((..((.((((....)))).))......))))))))))))...))..))))..)))))))))))........ ( -26.50)
>DroSim_CAF1 3534 117 + 1
AAAUGUAACUCUAUCCCUUUCGUUUCCGUAGGAAAACCUUAUAUAU---AAGAUGAUAUUAUAAUAUGAUAUAUGAUGUUAUGUAUAGAUUGGAAUUCCCAUAUGGAAAUGAUAAAAUAA
...................(((((((((((((((..((((((((((---((.((.((((...........)))).)).))))))))))...))..))))..)))))))))))........ ( -27.50)
>consensus
AAACGUAACUCUAUCCCUUUCGUUUCCGUAGGAAAACCUUAUAUAU___AAGAUGAUAUCAUAAUAUGAUAUAUGAUGUUAUGUAUAGAUUGGAAUUCCCAUAUGGAAAUGAUAAAAUAA
...................(((((((((((((((..((...(((((......(((((((((((........))))))))))))))))....))..))))..)))))))))))........ (-12.42 = -16.53 +   4.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:37 2006