| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 11,190,681 – 11,190,801 |
| Length | 120 |
| Max. P | 0.549540 |
| Location | 11,190,681 – 11,190,801 |
|---|---|
| Length | 120 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 90.56 |
| Mean single sequence MFE | -41.35 |
| Consensus MFE | -35.30 |
| Energy contribution | -35.55 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.39 |
| Structure conservation index | 0.85 |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.549540 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11190681 120 + 22224390 CGAUCUUGCCAUAGUGAUGCAGCGCCUUGGCCGCCAAAUAGUUGAUAUUAAUCCAGAUGGGUCCACGCCAAUACGGCGGAUCGUGUUCCGUAUUGCGUUGCAUAUACAAUGGCGAUCUCU .((((..(((((.((((((((((((.(((((.....((((.....)))).((((....))))....)))))....(((((......)))))...))))))))).))).)))))))))... ( -42.80) >DroSim_CAF1 231 120 + 1 CGAUCUUGCCAUAGUGAUGCAGCGCCUUGGCCGCCAAGUAGUUGAUAUUAAUCCAGAUGGGCCCGCGCCAAUACGGCGGAUCGUGCUCCGUAUUGCGUUGCAUAUACAAUGGCGAGCUCU .((.((((((((.(((((((((((((((((...)))))..................((((((.((((((.....))))...)).)).))))...))))))))).))).)))))))).)). ( -47.80) >DroEre_CAF1 1441 120 + 1 CGAUUUUGCCAUAGUGAUGGAGCGCCUUCGCCGCCAGAUAGUUGAUAUUAAUCCAGAUGGGGCCGCGCCAAUACGGCGGAUCGUGCUCCGUGUUGCGUUUCAUGUAGAGCGGUGAUCUCU .((..(..((........(((((((..(((((.(((....((((....)))).....))))))..((((.....))))))..)))))))((.((((((...)))))).))))..)..)). ( -39.80) >DroYak_CAF1 204 120 + 1 CAAUCUUGCCAUAGUGAUUCAGCGCCUUGGCCGCCAAAUAGUUGAUAUUAAUCCAGAUGGAGCCGCGCCAAUACGGCGGAUCGUGUUCCGUGUUGCGCUUCAUGUACAGUGGUGAUCUCU .....(..((((.(((..(((((...((((...))))...)))))...........(((((((.(((((.....)))(((......))).....))))))))).))).))))..)..... ( -35.00) >consensus CGAUCUUGCCAUAGUGAUGCAGCGCCUUGGCCGCCAAAUAGUUGAUAUUAAUCCAGAUGGGGCCGCGCCAAUACGGCGGAUCGUGCUCCGUAUUGCGUUGCAUAUACAAUGGCGAUCUCU .((..(((((((.((((((((((((.(((((.((..((((.....))))..(((....)))...)))))))....(((((......)))))...))))))))).))).)))))))..)). (-35.30 = -35.55 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:31 2006