Locus 4257

Sequence ID X_DroMel_CAF1
Location 11,184,640 – 11,184,755
Length 115
Max. P 0.894033
window6995

overview

Window 5

Location 11,184,640 – 11,184,755
Length 115
Sequences 6
Columns 115
Reading direction forward
Mean pairwise identity 92.69
Mean single sequence MFE -24.07
Consensus MFE -21.73
Energy contribution -22.23
Covariance contribution 0.50
Combinations/Pair 1.11
Mean z-score -1.52
Structure conservation index 0.90
SVM decision value 0.98
SVM RNA-class probability 0.894033
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11184640 115 + 22224390
AUCGCCGGCAAUCGCAUUUAUUAUGUAAUAGACGUAGUGAAUCACAAUUGGCAGCAGCACCAGGCCCGAGAUUAUUUGGAAAAUUAAUAACAAAACAAAUUGCAUGCGAUUGCAA
.......(((((((((((((((((((.....)))))))))).........((((..((.....))(((((....)))))....................)))).))))))))).. ( -28.10)
>DroPse_CAF1 4208 113 + 1
AUCGCCGGCAAUCGCAUUGAUUAUAUAAUAGAUGUAGUGUAUCACAAUUAAAAGCAGCACAAAGCCCGAUAUUAUUUGGAAAAUUAAUAACAAAACAAAUUGCAUGCGACUCC--
.((((..(((((.(((((.(((....))).))))).((((................)))).....((((......))))...................)))))..))))....-- ( -17.59)
>DroSim_CAF1 4625 115 + 1
AUCGCCGGCAAUCGCAUUUAUUAUGUAAUAGACGUAGUGUAUCACAAUUGGCAGCAGCACCAGGCCCGAGAUUAUUUGGAAAAUUAAUAACAAAACAAAUUGCAUGCGAUUGCAA
.......((((((((((.((((((((.....))))))))...........((((..((.....))(((((....)))))....................)))))))))))))).. ( -26.40)
>DroEre_CAF1 4546 115 + 1
AUCGCCGGCAAUCGCAUUUAUUAUGUAAUAGACGUAGUGAAUCACAAUUGGCAGCAGCACCAAGCCCGAGAUUAUUUGGAAAAUUAAUAACAAAACAAAUUGCAUGCGAUUGCAA
.......(((((((((((((((((((.....)))))))))).........((((..((.....))(((((....)))))....................)))).))))))))).. ( -28.20)
>DroYak_CAF1 4542 115 + 1
AUCGCCGGCAAUCGCAUUUAUUAUGUAAUAGACGUAGUGAAUCACAAUUGGCAGCAGCACCAAGCCCGAGAUUAUUUGGAAAAUUAAUAACAAAACAAAUUGCAUGCGAUUGCAA
.......(((((((((((((((((((.....)))))))))).........((((..((.....))(((((....)))))....................)))).))))))))).. ( -28.20)
>DroAna_CAF1 5467 112 + 1
AUCACCGGCAAUCGCAUUUAUUAUGUAAUAGAUAUAGUGUAUCACAAUCAGAAGCAGCACAAAGCCCGAGAAUAUUUGGAAAAUUAAUAACAAAACAAAUUGCAUGCGACUC---
...........((((((.((((((((.....))))))))..............(((((.....))(((((....))))).....................)))))))))...--- ( -15.90)
>consensus
AUCGCCGGCAAUCGCAUUUAUUAUGUAAUAGACGUAGUGAAUCACAAUUGGCAGCAGCACCAAGCCCGAGAUUAUUUGGAAAAUUAAUAACAAAACAAAUUGCAUGCGAUUGCAA
.......((((((((((.((((((((.....))))))))..............(((((.....))((((......)))).....................))))))))))))).. (-21.73 = -22.23 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:26 2006