Locus 4249

Sequence ID X_DroMel_CAF1
Location 11,166,446 – 11,166,541
Length 95
Max. P 0.841242
window6982

overview

Window 2

Location 11,166,446 – 11,166,541
Length 95
Sequences 3
Columns 106
Reading direction reverse
Mean pairwise identity 59.93
Mean single sequence MFE -17.90
Consensus MFE -7.83
Energy contribution -9.50
Covariance contribution 1.67
Combinations/Pair 1.00
Mean z-score -1.92
Structure conservation index 0.44
SVM decision value 0.75
SVM RNA-class probability 0.841242
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11166446 95 - 22224390
UCCCCGUUUCACGUUUUUC---CCC--CUUUCCAUUCUUUUUUUCCCU------UUUUUUUUUUGGCUUGCGAACAAUUUGCGUUGCCAAAAGCAGCAAAUGCAAU
...................---...--.....................------......(((((((.(((((.....)))))..)))))))(((.....)))... ( -15.10)
>DroYak_CAF1 75862 77 - 1
GCCCCGUUUCACGUUAUUU---CCC--UUU------------------------CUUUUUUUUUGGCUUGCGAACAAUUUGCGUUGCCAAAAGCAGCAAAUGCAAU
...................---...--...------------------------......(((((((.(((((.....)))))..)))))))(((.....)))... ( -15.10)
>DroAna_CAF1 75483 102 - 1
CCCUCGAUUCCCAGCACUUGUCCGUGUCUGGCCGUUCUGGCCCUCCGUUCCAAUCCCUCCUUUUGG----CCAACUAUUUUCGUUGCCAAACGCAGCAAAUGCAAC
.............(((.((((..((((..((((.....))))....................((((----(.(((.......)))))))))))).)))).)))... ( -23.50)
>consensus
CCCCCGUUUCACGUUAUUU___CCC__CUU_CC_UUCU_____UCC_U______CUUUUUUUUUGGCUUGCGAACAAUUUGCGUUGCCAAAAGCAGCAAAUGCAAU
............................................................(((((((..((((.....))))...)))))))(((.....)))... ( -7.83 =  -9.50 +   1.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:13 2006