Locus 4248

Sequence ID X_DroMel_CAF1
Location 11,149,562 – 11,149,658
Length 96
Max. P 0.512624
window6981

overview

Window 1

Location 11,149,562 – 11,149,658
Length 96
Sequences 3
Columns 96
Reading direction forward
Mean pairwise identity 80.67
Mean single sequence MFE -8.97
Consensus MFE -8.64
Energy contribution -8.20
Covariance contribution -0.44
Combinations/Pair 1.10
Mean z-score 1.45
Structure conservation index 0.96
SVM decision value -0.04
SVM RNA-class probability 0.512624
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11149562 96 + 22224390
UUCCAUAUAUGUAUAUUCCAUUUCAUAUUCCCAUAGUGUUCGAAAUGUUUAUAGCAUCGAACGUAUAUCGUUUUGUCAGAUCCCCAUGCCGAAUCG
.......((((.((((........))))...))))..((((((..(((.....)))))))))......((.((((.((........)).)))).)) ( -10.50)
>DroSec_CAF1 63746 77 + 1
UUUCAUAUA-------------------GCCCAUAGUGUUUGAAAUGUUUAUAGCAUCGAACGUAUAUCGUUUUGUCAGAUCCCCAUGCCGAAUCG
.........-------------------....(((.(((((((..(((.....)))))))))))))..((.((((.((........)).)))).)) (  -8.20)
>DroEre_CAF1 64685 77 + 1
UUCCAUAUA-------------------GUCUAUAGUGUUUGAAAUGUUUAUAGCAUCGAACGUGUAUCGUUUUGUCAGAUCCCCAUGCCGAAUCU
.........-------------------...((((.(((((((..(((.....))))))))))))))..(.((((.((........)).)))).). (  -8.20)
>consensus
UUCCAUAUA___________________GCCCAUAGUGUUUGAAAUGUUUAUAGCAUCGAACGUAUAUCGUUUUGUCAGAUCCCCAUGCCGAAUCG
................................(((.(((((((..(((.....)))))))))))))...(.((((.((........)).)))).). ( -8.64 =  -8.20 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:12 2006