Locus 4243

Sequence ID X_DroMel_CAF1
Location 11,128,640 – 11,128,732
Length 92
Max. P 0.757554
window6971

overview

Window 1

Location 11,128,640 – 11,128,732
Length 92
Sequences 6
Columns 101
Reading direction forward
Mean pairwise identity 66.55
Mean single sequence MFE -18.05
Consensus MFE -7.41
Energy contribution -7.92
Covariance contribution 0.50
Combinations/Pair 1.31
Mean z-score -1.74
Structure conservation index 0.41
SVM decision value 0.49
SVM RNA-class probability 0.757554
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11128640 92 + 22224390
AAUAUCUUGGGACAAACGCAGGGACAUGUUC------UUGUCGUCCUUUAUCUG--GGCUUUAUCCCUCCUUUCCCCACAUACACACCCCCCCUCCCCCU-
........((((.....(((((((....)))------)))).((((.......)--)))....)))).................................- ( -16.70)
>DroPse_CAF1 43109 92 + 1
AGUAUCUGGGGACCUACAGACAGUCA--GUCUUGCCUUUGUCGUCCUUUCUUUCAAUGCUGCCACUCUCUGUCCUC-GUCU-AACCUCGCACAUUU-----
.......((((((....(((.(((((--((.(((...................))).))))..))).)))))))))-....-..............----- ( -14.21)
>DroSec_CAF1 43951 86 + 1
AAUAUCUUGGGACAAACGCAGGGACAUGUUCUUGUUCUUGUCGUCCUUUAUCUG--GGCUUUAUCCCUCCUUUCCCCACUUCCACCCC-------------
........((((.....(((((((((......))))))))).((((.......)--)))....)))).....................------------- ( -20.80)
>DroEre_CAF1 43542 89 + 1
AAUAUCUUGGGACAAACGCAGGAACAUGUUCUUGUUCUUGUCGUCCUUUAUCUG--GGCUGUAUCCCUUGUUACCCC----ACAUCCUCGACGUC------
.......((((((((..(((((((((......))))))))).((((.......)--)))........))))...)))----).............------ ( -21.60)
>DroYak_CAF1 46558 94 + 1
AAUAUCUUGGGACAAACGCAGGGACAUGUUCUUGUUCUUGUCGUCCUUUAUCUG--GGCUACCUCCCUCCAUCCCCC-CAUUCACCCACCACAUCC----C
.......((((......(((((((((......))))))))).((((.......)--)))..................-......))))........----. ( -20.80)
>DroPer_CAF1 43290 92 + 1
AGUAUCUGGGGACCUACAGACAGUCA--GUCUUGCCUUUGUCGUCCUUUCUUUCAAUGCUGCCACUCUCUGUCCUC-GUCU-AACCUCGCACAUUU-----
.......((((((....(((.(((((--((.(((...................))).))))..))).)))))))))-....-..............----- ( -14.21)
>consensus
AAUAUCUUGGGACAAACGCAGGGACAUGUUCUUGUUCUUGUCGUCCUUUAUCUG__GGCUGCAUCCCUCCUUCCCCC_CAU_CACCCCCCACAUC______
........(((((....((((((.((......)).)))))).)))))...................................................... ( -7.41 =  -7.92 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:03 2006