| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 11,125,699 – 11,125,798 |
| Length | 99 |
| Max. P | 0.964146 |
| Location | 11,125,699 – 11,125,798 |
|---|---|
| Length | 99 |
| Sequences | 3 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 84.51 |
| Mean single sequence MFE | -19.91 |
| Consensus MFE | -15.93 |
| Energy contribution | -15.93 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.84 |
| Structure conservation index | 0.80 |
| SVM decision value | 1.56 |
| SVM RNA-class probability | 0.964146 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11125699 99 - 22224390 CCCAGUUUUCCUCCUCGUCUGCUGCUGCCAUUUCCUCUUGGCCAUUCAUUGCCUUCAUCAUCUUGGCCAAUUCCUGGGAGAGAGUCCUUGUACACUUUU (((((...............((....)).........(((((((...................)))))))...))))).((((((........)))))) ( -19.81) >DroEre_CAF1 39755 86 - 1 CCCAGUUUUCCUCUU---------CCGCCUCUUUCUCUUGGCCA----UUGCCUUCAUCAUCUUGGCCAAUUCCUGGGAGAGAGUCCUUGCACACUUUU ...............---------..((((((((((((((((((----...............))))))).....))))))))).....))........ ( -20.66) >DroYak_CAF1 43668 86 - 1 CCCAGUUUCUCUCUU---------CUGCCUUUUCCACUUGGCCA----UUGCCUUCAUCAUCUUGGCCAAUUCCUGGGAGAGAGUCCUUGCACACUUUU ..(((...(((((((---------((...........(((((((----...............))))))).....)))))))))...)))......... ( -19.25) >consensus CCCAGUUUUCCUCUU_________CUGCCUUUUCCUCUUGGCCA____UUGCCUUCAUCAUCUUGGCCAAUUCCUGGGAGAGAGUCCUUGCACACUUUU (((((.....................(((..........)))........(((...........)))......))))).((((((........)))))) (-15.93 = -15.93 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:02 2006