Locus 4241

Sequence ID X_DroMel_CAF1
Location 11,124,963 – 11,125,058
Length 95
Max. P 0.741222
window6969

overview

Window 9

Location 11,124,963 – 11,125,058
Length 95
Sequences 6
Columns 111
Reading direction forward
Mean pairwise identity 82.33
Mean single sequence MFE -21.50
Consensus MFE -19.33
Energy contribution -18.22
Covariance contribution -1.11
Combinations/Pair 1.19
Mean z-score -1.50
Structure conservation index 0.90
SVM decision value 0.45
SVM RNA-class probability 0.741222
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11124963 95 + 22224390
AGCGCUGUCUGCAUAUUAAAACGCUGUCAAAAUUUGCACGGCUAAGUGUCAUUUCAUUUGACGCUAC-CCUCUCUUUCACA--UUAGCUC-----------GUGCCGUC--
((((.................))))..........((((((((((((((((.......)))))))..-.............--.)))).)-----------))))....-- ( -20.82)
>DroPse_CAF1 39399 92 + 1
AGCGCUGCCUGCAUAUUAAAAUGCUGUCAAAAU-UGCACGGCUAAAUGUCAUUUCAUUUGGCAUUGC-UCUG-CUUUCAC----------------UCCGUGUGCCACCCU
.((((((.(.((((......)))).).))....-.(((..((((((((......))))))))..)))-....-.......----------------.....))))...... ( -20.90)
>DroSec_CAF1 40304 94 + 1
AGCGCUGUCUGCAUAUUAAAACGCUGUCAAAAU-UGCACGGCUAAGUGUCAUUUCAUUUGACGCUUC-CCUCUCUUUCACU--UUAGCUC-----------GUGCCGUC--
.((((.(...((..........(((((((....-)).))))).((((((((.......)))))))).-.............--...)).)-----------))))....-- ( -20.90)
>DroEre_CAF1 39018 95 + 1
AGCGCUGUCUGCAUAUUAAAACGCUGUCAAAAU-UGCACGGCUAAGUGUCAUUUCAUUUGACGCUUCCCCUCUCUUUCACU--GUCGCUC-----------GUGCCAUC--
.((((.(...((..........(((((((....-)).))))).((((((((.......))))))))...............--...)).)-----------))))....-- ( -21.00)
>DroYak_CAF1 42963 94 + 1
AGCGCUGUCUGCAUAUUAAAACGCUGUCAAAAU-UGCACGGCUAAGUGUCAUUUCAUUUGACGCUUU-CCUCUCUUUCACU--CUCGCUC-----------GUGCCAUC--
.((((.(...((..........(((((((....-)).))))).((((((((.......)))))))).-.............--...)).)-----------))))....-- ( -21.00)
>DroPer_CAF1 39595 108 + 1
AGCGCUGCCUGCAUAUUAAAAUGCUGUCAAAAU-UGCACGGCUAAAUGUCAUUUCAUUUGGCAUUGC-UCUC-CUUUCACUCACCCGCUCUGGCCCUCCGUGUGCCACCCU
((((.((.(.((((......)))).).))....-.(((..((((((((......))))))))..)))-....-............)))).((((.(.....).)))).... ( -24.40)
>consensus
AGCGCUGUCUGCAUAUUAAAACGCUGUCAAAAU_UGCACGGCUAAGUGUCAUUUCAUUUGACGCUUC_CCUCUCUUUCACU__CUCGCUC___________GUGCCAUC__
.((((.(((((((.(((.............))).)))).)))..(((((((.......)))))))....................................))))...... (-19.33 = -18.22 +  -1.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:01 2006