| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 11,115,477 – 11,115,579 |
| Length | 102 |
| Max. P | 0.880157 |
| Location | 11,115,477 – 11,115,579 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 85.96 |
| Mean single sequence MFE | -19.03 |
| Consensus MFE | -17.12 |
| Energy contribution | -16.98 |
| Covariance contribution | -0.14 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.90 |
| SVM decision value | 0.91 |
| SVM RNA-class probability | 0.880157 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11115477 102 - 22224390 GCACAAGACAACUAAAUUUGCUCGGUAGUGCAAUUAUUACUAAUAGGGCUAAUAAGCAUGUCUUAAGUGCCCUUCACCCACACACCCACACACAAACA--CACA ((((((((((.....(((.((((..(((((.......)))))...)))).))).....))))))..))))............................--.... ( -19.00) >DroPse_CAF1 32024 94 - 1 GCACAAGACAACUAAAUUUGCUCAGUAGUGCAAUUAUUACUAAUAGGGCUAAUAAGCACGUCUUAAGUGCCGCACACACA----------CACAAACAUGCAUA (((...(((((......))).)).((.((((..((((((((.....)).))))))((((.......)))).))))))...----------........)))... ( -17.50) >DroSec_CAF1 32657 104 - 1 GCACAAGACAACUAAAUUUGCUCGGUAGUGCAAUUAUUACUAAUAGGGCUAAUAAGCACGUCUUAAGUGCCCUUCACCCACACACACACACACAAACAAGCACA (((((((((......(((.((((..(((((.......)))))...)))).)))......)))))..)))).................................. ( -17.40) >DroEre_CAF1 30321 100 - 1 GCACAAGACAACUAAAUUUGCUCGGUAGUGCAAUUAUUACUAAUAGGGCUAAUAAGCACGUCUUAAGUGCCCUUCGCCCACCCGCACACACAGA--GG--CCAA ....................(((.((.((((.((((....)))).((((......((((.......)))).....))))....))))))...))--).--.... ( -22.40) >DroYak_CAF1 35577 98 - 1 GCACAAGACAACUAAAUUUGCUCGGUAGUGCAAUUAUUACUAAUAGGGCUAAUAAGCACGUCUUAAGUGCCCUUCGCCCACUCACACAAACACA------CAAA ((((..(((((......))).))....))))..............((((......((((.......)))).....))))...............------.... ( -18.90) >DroAna_CAF1 31997 102 - 1 GCACAGGACAACUAAAUUUGCUCUGUAGUGCAAUUAUUACUAAUAGGGCUAAUAAGCACGUCUUAAGUGCCCUAAACACACACACCCUCACACACACA--CUAU ((((.((((((......))).)))...))))............((((((...((((.....))))...))))))........................--.... ( -19.00) >consensus GCACAAGACAACUAAAUUUGCUCGGUAGUGCAAUUAUUACUAAUAGGGCUAAUAAGCACGUCUUAAGUGCCCUUCACCCACACACACACACACAAACA__CAAA (((((((((......(((.((((..(((((.......)))))...)))).)))......)))))..)))).................................. (-17.12 = -16.98 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:54 2006