Locus 4236

Sequence ID X_DroMel_CAF1
Location 11,111,977 – 11,112,076
Length 99
Max. P 0.569533
window6960

overview

Window 0

Location 11,111,977 – 11,112,076
Length 99
Sequences 4
Columns 99
Reading direction reverse
Mean pairwise identity 72.16
Mean single sequence MFE -21.84
Consensus MFE -9.47
Energy contribution -9.91
Covariance contribution 0.44
Combinations/Pair 1.23
Mean z-score -2.14
Structure conservation index 0.43
SVM decision value 0.07
SVM RNA-class probability 0.569533
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11111977 99 - 22224390
UCACUGCGCAUAUAGUUCGAAUGCAGUGCUUGGUUUAAUUUAUCGAAAGUAUAUGCAUGAGUAAUCAUGCGGUGAAAUGAAAUCAUUUCAAUUCAAUCU
..((((((((((((.(((((......................)))))..)))))))((((....)))))))))((((((....)))))).......... ( -26.45)
>DroSec_CAF1 30677 82 - 1
UCACUGGACGUAUA--UCGAUUGCAGUGCUUGGUGUAAUUUAUCGAAAGCAUAUGCAUGAGUAAUCAUGCA---------------UUCAAUUCAAUCU
..............--..(((((..((((((((((.....))))..))))))((((((((....)))))))---------------)......))))). ( -21.50)
>DroEre_CAF1 28325 88 - 1
UCGCUGGGCUUAUU--UU-------GUGCCUUGUUUAAUUUAUCAAAAGCAUAUGCGCGAGUAAUGCCGCAGUGAAAUU--AUCAUUUCAAUUCCAUCU
(((((((((....(--((-------((((..(((((..........)))))...)))))))....))).))))))....--.................. ( -23.80)
>DroYak_CAF1 33541 95 - 1
UCACUCGGUUUAUU--UUGGUUUCAGUGCUUUGCUUAAUUUAUCGAAUGCAUAUGCAUGAGUAAUCAUGGGUUAAAAUU--AUCAUUUCAAUUGAAUCU
......((((((..--((((.....((((((((.(......).)))).))))((.(((((....))))).)).......--......)))).)))))). ( -15.60)
>consensus
UCACUGGGCUUAUA__UCGAUUGCAGUGCUUGGUUUAAUUUAUCGAAAGCAUAUGCAUGAGUAAUCAUGCAGUGAAAUU__AUCAUUUCAAUUCAAUCU
.........................((((((...............)))))).(((((((....)))))))............................ ( -9.47 =  -9.91 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:53 2006