| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 11,106,912 – 11,107,071 |
| Length | 159 |
| Max. P | 0.732065 |
| Location | 11,106,912 – 11,107,032 |
|---|---|
| Length | 120 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 97.08 |
| Mean single sequence MFE | -34.35 |
| Consensus MFE | -32.38 |
| Energy contribution | -33.00 |
| Covariance contribution | 0.62 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.94 |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.666294 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11106912 120 + 22224390 CUCGCCGCUUCAGAUUUUGGAAGGAUAAUUCAGGUCCUUGGCUCUCAGAUGUUUAGGCAUUUGAUUAAUGCCAAAAGAGAAACAAAUAGCUUAAGUCGACUGCCGGCGAAAGAGACGCAA .(((((((....(((((.((((((((.......))))))(((..((((((((....)))))))).....))).................)).)))))....).))))))........... ( -33.00) >DroSec_CAF1 25877 120 + 1 CUCGCCGCUUCAGAUUUUGGAAGGAUAAUUCAGGUCCUUGGCUCUCAGAUGUUUAGGCAUUUGAUUAAUGCCAAAAGAGAAACAAAUAGCUAAAGUCGACUGCGGGCGAAAGAGACGCAA .(((((((....((((((((((((((.......))))))(((..((((((((....)))))))).....))).................))))))))....)).)))))........... ( -36.60) >DroEre_CAF1 23480 120 + 1 CUCGCCGCUUCAGAUUUUGGAAGGAUAAUUCAGGUCCUUGGCUCUCAGAUGUUUAGGCAUUUGAUUAAUGCCAAAGGAGAAACAAAUAGCUUAAGUCGACUGCGAGCGAAAGAGACGCAA .(((((((....(((((.((........(((...((((((((..((((((((....)))))))).....))).))))))))........)).)))))....))).))))........... ( -33.19) >DroYak_CAF1 26031 120 + 1 CUCGCCGCUUCAGAUUUGGGAAGGAUAAUUCAGGUCCUUGCCUCUCAGAUGUUUAGGCAUUUGAUUAAUGCCAAAAGAGAAACAAAUAGCUUAAGUCGACUGCGGGCGAAAGAGAUGCAA .(((((((....(((((((.((((((.......)))))).))((((.....(((.((((((.....))))))))).))))............)))))....)).)))))........... ( -34.60) >consensus CUCGCCGCUUCAGAUUUUGGAAGGAUAAUUCAGGUCCUUGGCUCUCAGAUGUUUAGGCAUUUGAUUAAUGCCAAAAGAGAAACAAAUAGCUUAAGUCGACUGCGGGCGAAAGAGACGCAA .(((((((....((((((((((((((.......))))))(..((((.....(((.((((((.....))))))))).))))..)......))))))))....)).)))))........... (-32.38 = -33.00 + 0.62)
| Location | 11,106,952 – 11,107,071 |
|---|---|
| Length | 119 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 88.19 |
| Mean single sequence MFE | -26.93 |
| Consensus MFE | -20.02 |
| Energy contribution | -20.90 |
| Covariance contribution | 0.88 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.43 |
| SVM RNA-class probability | 0.732065 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11106952 119 + 22224390 GCUCUCAGAUGUUUAGGCAUUUGAUUAAUGCCAAAAGAGAAACAAAUAGCUUAAGUCGACUGCCGGCGAAAGAGACGCAAAUAGGCAGAAAA-AAAGAGAGGCCAAUAGCUGGGGCCACA ..((((.(((.....((((((.....))))))....(((..........)))..)))..(((((.(((.......))).....)))))....-...))))((((.........))))... ( -31.40) >DroSec_CAF1 25917 105 + 1 GCUCUCAGAUGUUUAGGCAUUUGAUUAAUGCCAAAAGAGAAACAAAUAGCUAAAGUCGACUGCGGGCGAAAGAGACGCAAAUAGGCAGAAAA-AAAGAGAGGCCA--------------A .(((((.........((((((.....))))))......................(((...((((..(....)...))))....)))......-...)))))....--------------. ( -26.70) >DroEre_CAF1 23520 115 + 1 GCUCUCAGAUGUUUAGGCAUUUGAUUAAUGCCAAAGGAGAAACAAAUAGCUUAAGUCGACUGCGAGCGAAAGAGACGCAAGUAGCCAGAAA--AAAGAGAUGCCAAUAGCAGGGC-CA-- ((((.(((.((((((((((((((.((....((...))..)).))))).))))))).)).))).)))).......((....)).(((.....--.......(((.....))).)))-..-- ( -27.62) >DroYak_CAF1 26071 118 + 1 CCUCUCAGAUGUUUAGGCAUUUGAUUAAUGCCAAAAGAGAAACAAAUAGCUUAAGUCGACUGCGGGCGAAAGAGAUGCAAAUAGCCAGAAAAAAAAGAGAUGCCAAUAGCAGGGC-CA-A ..((((.(((.....((((((.....))))))....(((..........)))..)))...((((..(....)...)))).................)))).(((........)))-..-. ( -22.00) >consensus GCUCUCAGAUGUUUAGGCAUUUGAUUAAUGCCAAAAGAGAAACAAAUAGCUUAAGUCGACUGCGGGCGAAAGAGACGCAAAUAGCCAGAAAA_AAAGAGAGGCCAAUAGCAGGGC_CA_A ((((((.........((((((.....))))))......................(((...((((..(....)...))))....)))..........)))).))................. (-20.02 = -20.90 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:52 2006