Locus 423

Sequence ID X_DroMel_CAF1
Location 1,227,828 – 1,227,938
Length 110
Max. P 0.964650
window650

overview

Window 0

Location 1,227,828 – 1,227,938
Length 110
Sequences 5
Columns 110
Reading direction forward
Mean pairwise identity 90.33
Mean single sequence MFE -39.59
Consensus MFE -33.70
Energy contribution -35.02
Covariance contribution 1.32
Combinations/Pair 1.09
Mean z-score -1.87
Structure conservation index 0.85
SVM decision value 1.57
SVM RNA-class probability 0.964650
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1227828 110 + 22224390
CCCCUUGGCUCGGCUGCCGAGAUGUACACACACAUAUUCGGAUUCUGAUUUUGCCGAGAGGAAGUGCAGUUCCGGAGUCCCGAGUGUGGAGCUGCGCUCAAUCUGCAUCC
.((((((((((((...(((((((((......)))).)))))...))))....)))))).)).((((((((((((.(.(....).).))))))))))))............ ( -43.20)
>DroSec_CAF1 1361 106 + 1
CCCCUUGACUCGGCUGCCGAGAUGUACACACACAUAUUCGGAUUCUGAUUUUGCCGAGA----GUGCAGUUCCGGAGUCGCGAGUCCUGAGCUGCGCUCAAUCUGCAUCC
.........(((((..(((((((((......)))).)))))...........)))))((----(((((((((.(((.(....).))).)))))))))))........... ( -39.12)
>DroSim_CAF1 5226 106 + 1
CCCCUUGACUCGGCUGCCGAGAUGUACACACACAUAUUCGGAUUCUGAUUUUGCCGAGA----GUGCAGUUCCGGAGUCGCGAGUCCUGAGCUGCGCUCAAUCUGCAUCC
.........(((((..(((((((((......)))).)))))...........)))))((----(((((((((.(((.(....).))).)))))))))))........... ( -39.12)
>DroEre_CAF1 1373 110 + 1
GUCGUUGUAUCGACUGCCGAGAUGUACACACACAUAUUCGGAUUCCGAUUUUGCCGAGAGGAAUUGCAGUUCCGGAGUCCCGAGUCCGGAUUUGCGCUCAAUCCGCAUUC
((((......))))..(((((((((......)))).)))))..........(((.((...((..(((((.((((((.(....).)))))).))))).))..)).)))... ( -33.40)
>DroYak_CAF1 5128 110 + 1
CCCGUUGGCUCGGCUGCCGAGAUGUACACACACAUAUUCGGAUUCUGAUUUUGCCGAGAGGAAUUGCAGUUCCGGAGUCGCGAGUCCGGAGCUGCGCUCAAUCCGCAUCU
((..(((((((((...(((((((((......)))).)))))...))))....)))))..))....(((((((((((.(....).)))))))))))((.......)).... ( -43.10)
>consensus
CCCCUUGACUCGGCUGCCGAGAUGUACACACACAUAUUCGGAUUCUGAUUUUGCCGAGAGGAAGUGCAGUUCCGGAGUCGCGAGUCCGGAGCUGCGCUCAAUCUGCAUCC
....((((((((((..(((((((((......)))).)))))...........)))))).....(((((((((((((.(....).)))))))))))))))))......... (-33.70 = -35.02 +   1.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:13 2006