| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 11,077,540 – 11,077,659 |
| Length | 119 |
| Max. P | 0.627260 |
| Location | 11,077,540 – 11,077,659 |
|---|---|
| Length | 119 |
| Sequences | 4 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 90.62 |
| Mean single sequence MFE | -38.23 |
| Consensus MFE | -29.25 |
| Energy contribution | -31.38 |
| Covariance contribution | 2.12 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.627260 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11077540 119 + 22224390 CGCAGGCCACACUUUGAUGUCGCACGAAGGGAAAAGGACCUGCGAAAUUUCCACAGUAAUGAAAAGCUGUGCCGGCGACAUGGCACUUUUCACAUAGAAUUUGUGGAUAUCAUUAGGGC .....(((......(((((((.((((((.(((((((..((((((.......((((((........))))))....)).)).))..)))))).)......)))))))))))))....))) ( -35.00) >DroSec_CAF1 29299 119 + 1 CGCAGGACGCACUUUGAUGUCGCACGAAGGGAAAAGGGCCUGCGAAAUUUCCACAGCAAUGAAAAGCUGUGCUGGCGACAUGGCACUUUUCACAUAGAAUUUGUGGAUAUCAUCAAGGC ........((.((((((((((.((((((.(((((((.(((((((.......((((((........))))))....)).)).))).)))))).)......)))))))))))))..))))) ( -37.20) >DroEre_CAF1 31837 117 + 1 CGCAGGCCACACUUUGAUGUCGCACGAAGGGAGAGGG-CCUGCGAAAAUUCCACAGAUGUGAAAAGCUGG-GUGGCUACAUGGCACUUUUCACAUAGAAUUUGUGGAUAUCAUUAGGGC ((((((((...(((((........)))))......))-)))))).....(((((((((((((((((.((.-(((....)))..))))))))))).....))))))))............ ( -41.30) >DroYak_CAF1 29575 119 + 1 CGCAGGCCACACUUUGAUGUCGCACGAAGGGCAAGGGACCUGCGAAAUUUCCACAGAUGUGAAAAGCUGUGCUGGCGACAUGGUGCUUUUCACAUAGAAUUUGGGGAUAUCAUUAGGGC .(((((((...(((((........)))))......)).)))))((.((..(((.(.(((((((((((.....((....))....)))))))))))....).)))..)).))........ ( -39.40) >consensus CGCAGGCCACACUUUGAUGUCGCACGAAGGGAAAAGGACCUGCGAAAUUUCCACAGAAAUGAAAAGCUGUGCUGGCGACAUGGCACUUUUCACAUAGAAUUUGUGGAUAUCAUUAGGGC ((((((((...(((((........)))))......)).)))))).....(((((((((((((((((.(((..((....))..)))))))))))).....))))))))............ (-29.25 = -31.38 + 2.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:42 2006