Locus 4227

Sequence ID X_DroMel_CAF1
Location 11,072,504 – 11,072,601
Length 97
Max. P 0.868602
window6946

overview

Window 6

Location 11,072,504 – 11,072,601
Length 97
Sequences 3
Columns 99
Reading direction forward
Mean pairwise identity 90.91
Mean single sequence MFE -24.63
Consensus MFE -21.29
Energy contribution -21.30
Covariance contribution 0.01
Combinations/Pair 1.18
Mean z-score -2.41
Structure conservation index 0.86
SVM decision value 0.86
SVM RNA-class probability 0.868602
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11072504 97 + 22224390
AUUUCUAGAGAAUAUUGGCUUCAUUGUCAGACUAACAUUGUUCGAUAUUUAGAUAGCUAUUCAU--UGAAUAAAGGCCUUAAUUUGUUCGAGGCAAAUC
..............(((((......))))).....(.(((((((((...(((....)))...))--))))))).)((((..(.....)..))))..... ( -17.90)
>DroSec_CAF1 24446 99 + 1
AUUUCUAAGGAAUAUUGGCUUCAUUGUCGAACUAACAUUGUUCGAUAUUUAGAUAGUCAUUCAUCUCGAAUUAAGGCCUUAAUUUGUUCGAGGGGAAUC
((((((...(((...(((((((..((((((((.......))))))))....)).))))))))..(((((((.((........)).))))))))))))). ( -24.50)
>DroSim_CAF1 26103 99 + 1
AUUCCUAAUGAAUAUUGGCUUCAUUGUCGAACUAACAUUGUUCGAUAUUUAGAUAGCCAUUCAUCUCGAAUUAAGGCCUUAAUUUGUUCGAGGGGAAUC
((((((.(((((...(((((((..((((((((.......))))))))....)).))))))))))(((((((.((........)).))))))))))))). ( -31.50)
>consensus
AUUUCUAAAGAAUAUUGGCUUCAUUGUCGAACUAACAUUGUUCGAUAUUUAGAUAGCCAUUCAUCUCGAAUUAAGGCCUUAAUUUGUUCGAGGGGAAUC
((((((...(((...(((((((..((((((((.......))))))))....)).))))))))..(((((((.((........)).))))))))))))). (-21.29 = -21.30 +   0.01)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:41 2006