Locus 4225

Sequence ID X_DroMel_CAF1
Location 11,068,946 – 11,069,053
Length 107
Max. P 0.740122
window6944

overview

Window 4

Location 11,068,946 – 11,069,053
Length 107
Sequences 3
Columns 107
Reading direction reverse
Mean pairwise identity 90.29
Mean single sequence MFE -19.53
Consensus MFE -18.17
Energy contribution -18.17
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.66
Structure conservation index 0.93
SVM decision value 0.45
SVM RNA-class probability 0.740122
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11068946 107 - 22224390
AUACAAUAUGUAUAUUUUGUGCUUAAAUAAAUUAUAUAUGUGUGUUUCAGGGUGGAUCUCUGAACAAUCUAAAUCGGCAAUAACUAAAGUUACAACACAAGUUGAUU
(((((.((((((((.(((((......))))).)))))))))))))(((((((.....)))))))................((((....))))((((....))))... ( -21.80)
>DroSec_CAF1 21001 95 - 1
AUACAAUAUGUAUAUUUUGUGCUUAAAUAAAUUAUAUAUGUGUGUUUCAGGGCGGAUCUCUGAAAAAUCUAAAUCGGCAAUAACUAAAG------------UUUAUU
.((((.((((((((.(((((......))))).))))))))))))((((((((.....))))))))........................------------...... ( -17.90)
>DroSim_CAF1 22681 95 - 1
AUACAAUAUGUAUAUUUUGUGCUUAAAUAAAUUAUAUAUGUGUGUUUCAGGGUGGAUCUCUGAAAAAUCUAAAUCGGCAAUAACUAAAG------------UUUAUU
.((((.((((((((.(((((......))))).))))))))))))((((((((.....))))))))........................------------...... ( -18.90)
>consensus
AUACAAUAUGUAUAUUUUGUGCUUAAAUAAAUUAUAUAUGUGUGUUUCAGGGUGGAUCUCUGAAAAAUCUAAAUCGGCAAUAACUAAAG____________UUUAUU
(((((.((((((((.(((((......))))).)))))))))))))(((((((.....)))))))........................................... (-18.17 = -18.17 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:39 2006