| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 11,060,349 – 11,060,464 |
| Length | 115 |
| Max. P | 0.664659 |
| Location | 11,060,349 – 11,060,464 |
|---|---|
| Length | 115 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 71.43 |
| Mean single sequence MFE | -23.05 |
| Consensus MFE | -7.25 |
| Energy contribution | -6.78 |
| Covariance contribution | -0.47 |
| Combinations/Pair | 1.40 |
| Mean z-score | -2.07 |
| Structure conservation index | 0.31 |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.664659 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11060349 115 + 22224390 CCCACCCCCUUGUGAAUUUUAUGGCAUUUGCCUUUUGGGCGAUAAAAACCAAAUAAGCAGCGACUGGCUAACAACUUAGUCCACCCACAUAUAU-CAGCCAUCCACUCACACA----CAC ..........(((((.....(((((...(((..(((((..........)))))...)))(.(..(((((((....)))).)))..).)......-..)))))....)))))..----... ( -23.40) >DroPse_CAF1 37950 88 + 1 ------UCCCUCUGGAUUCUAUGGCAUUUUCCUUUUGGGCAAUAAAGGGAAAAUCAGCAGAGAGUAUCGAAGAGCUUAGCCC--CCA-----------------GCACACACA------- ------...((((..(((((...((((((((((((((.....))))))))))))..))..))))).....))))....((..--...-----------------)).......------- ( -21.20) >DroSec_CAF1 13080 111 + 1 CCCAGCUCCCCGUGGAUUUUAUGGCAUUUGCCUUUUGGGCGAUAAAAACCAAAUAAGCAGCGACUGGCUAACAACUUAGUCCACCCACAUAU---CAUCCACUUACACACA------CAC ...........((((((..((((((...(((..(((((..........)))))...)))))(..(((((((....)))).)))..).)))).---.)))))).........------... ( -24.70) >DroSim_CAF1 13816 107 + 1 CC------CUCUUGGAUUUUAUGGCAUUUGCCUUUUGGGCGAUAAAACCCAAAUAAGCAGCGACUGGCUAACAACUUAGUCCACCCACAUAU---CAUCCACUUACACACACA----CAC ..------....(((((..((((((...(((..((((((........))))))...)))))(..(((((((....)))).)))..).)))).---.)))))............----... ( -24.10) >DroEre_CAF1 14557 111 + 1 -------CCCUGUGGAUUUUAUGGCAUUGGCCUUUUGGGCGAUAAAAAGCAAAUAAGCAGCGACUGGCUAACAACUUAGUUCGCCCACCCAC--CCAUCCACUUACACACACACAACCAC -------....((((((.....(((....)))...(((((((......((......))(((.....)))...........))))))).....--..)))))).................. ( -27.50) >DroPer_CAF1 40995 88 + 1 ------UCCCUCUGGAUUCUAUGGCAUUUUCCAUUUGGGCAAUAAAGGGAAAAUCAGCAGAGAGUAUCGAAGAGCUUAGCCC--CCA-----------------GCACACACA------- ------...((((..(((((...(((((((((.((((.....)))).)))))))..))..))))).....))))....((..--...-----------------)).......------- ( -17.40) >consensus ______UCCCUGUGGAUUUUAUGGCAUUUGCCUUUUGGGCGAUAAAAACCAAAUAAGCAGCGACUGGCUAACAACUUAGUCCACCCACAUAU___CAUCCACUUACACACACA____CAC ......................(((..(((((.....))))).................((.....))..........)))....................................... ( -7.25 = -6.78 + -0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:33 2006