Locus 4221

Sequence ID X_DroMel_CAF1
Location 11,058,600 – 11,058,714
Length 114
Max. P 0.668566
window6936

overview

Window 6

Location 11,058,600 – 11,058,714
Length 114
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 75.92
Mean single sequence MFE -27.76
Consensus MFE -7.44
Energy contribution -9.04
Covariance contribution 1.60
Combinations/Pair 1.26
Mean z-score -1.78
Structure conservation index 0.27
SVM decision value 0.29
SVM RNA-class probability 0.668566
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11058600 114 - 22224390
ACAAUUUCCAGUUAGCAA-----GGCAAUGAAGGCCAUUGGAGUUUCGGGGGCCAAAAUUUAUCAACAGAAAUUCCACAAUCCCUGAAAAUGCGACAU-GUGCUAACUGCUCUGAAAUAA
...((((((((((((((.-----(((.......))).(((.(.(((((((((....(((((........)))))......))))))))).).)))...-.)))))))))....))))).. ( -30.40)
>DroSec_CAF1 11313 102 - 1
ACAAUUUCCAGUUAGCAG-----GCCAAUGAAGGCCAUUG-AGUUUCGAGCGCCAA-AUUUAUCAACAGGAAUUCCACA----------AUGCGACAU-GUGCCAACUGGUCUGGAAUAA
.....((((((((((..(-----((..(((..(((..(((-.....)))..)))..-...........((....))...----------......)))-..)))..)))).))))))... ( -24.70)
>DroSim_CAF1 11038 102 - 1
ACAAUUUCCAGUUAGCAG-----GGCAAUGAAGGCCAUUG-AGUUUCGAGAGCCAA-AUUUAUCAACAGGAAUUCCACA----------AUGCGACAU-GUGCCAACUGGUCUGGAACAA
.....((((((((((...-----(((((((..(((..(((-.....)))..)))..-...........((....))...----------......)))-.))))..)))).))))))... ( -27.00)
>DroEre_CAF1 12831 99 - 1
ACAAUUUCCAGUGGGCAG-----CGCAAUGGAGCCCAUUG-CGUUUUAAGCGCCAA-AUUUAUCAACAGGAAUUCCACAAUCGCCGAAAAUGUGGCA--------------AUGCGAUAA
...........(((((((-----((((((((...))))))-))))....)).))).-..(((((....((....))......((((......)))).--------------....))))) ( -26.90)
>DroYak_CAF1 11163 118 - 1
ACAAUUUCCAGUUAGCAAUCCAUGGCAAUGCAGGCCAUCG-AGUUUUAAGAGCCAA-AUUUAUCAACAGGAUUUUCACAACCACUGCAAAUGUGGCAUGGUGCUAACUGCUUUGCGAUAA
.(((....(((((((((..(((((.((.(((((......(-(((((........))-)))).......((..........)).)))))....)).))))))))))))))..)))...... ( -29.80)
>consensus
ACAAUUUCCAGUUAGCAG_____GGCAAUGAAGGCCAUUG_AGUUUCGAGAGCCAA_AUUUAUCAACAGGAAUUCCACAA_C_C_G_AAAUGCGACAU_GUGCCAACUGCUCUGCAAUAA
........(((((.(((.......(((.....(((..(((......)))..)))..............((....))..............))).......))).)))))........... ( -7.44 =  -9.04 +   1.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:32 2006