| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 11,057,940 – 11,058,033 |
| Length | 93 |
| Max. P | 0.704688 |
| Location | 11,057,940 – 11,058,033 |
|---|---|
| Length | 93 |
| Sequences | 4 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 86.60 |
| Mean single sequence MFE | -25.48 |
| Consensus MFE | -15.96 |
| Energy contribution | -16.40 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.36 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.704688 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11057940 93 + 22224390 AAAUAUUUUGAAAGAGCUCACUAAUUUCUUGACCACAUCUGUGU------ACAUGUGUGCAUGUUUCGCCUUUGGGGUCGUGGCAUAUAAAUUGCCGCU ...........(((((.........)))))((((.((...(((.------(((((....)))))..)))...)).))))((((((.......)))))). ( -25.00) >DroSec_CAF1 10680 94 + 1 AAAUAUUUUGAAAGAGCCCACUAAUUUCUUGACCUCAUCUGUGU----UUAUAUGUGUGCAUGUUUCGCAUUUG-GCUCGUGGCAUAUAAAUUGGCGCU .............(((((...........((....))..((((.----..(((((....)))))..))))...)-))))(((.((.......)).))). ( -19.80) >DroSim_CAF1 10400 95 + 1 AAAUAUUUUGAAAGAGCUCACUAAUUUCUUGACCUCAUCUGUGU----UUAUAUGUGUGCAUGUUUCGCAUUUGGGGUCGUGGCAUAUAAAUUGCCGCU ...........(((((.........)))))(((((((..((((.----..(((((....)))))..))))..)))))))((((((.......)))))). ( -30.20) >DroEre_CAF1 12210 99 + 1 AAAUAUUCAAAAAUAGAUCACUAAUUUCUUGACCACAUACGUACAUACAUGUAUGUGUGCAUGUAUCGCAUUUGGGGUCGUGGCAUAUAAAUUGCCGCC ...............((((.((((.......((..((((((((((....))))))))))...)).......))))))))((((((.......)))))). ( -26.94) >consensus AAAUAUUUUGAAAGAGCUCACUAAUUUCUUGACCACAUCUGUGU____UUAUAUGUGUGCAUGUUUCGCAUUUGGGGUCGUGGCAUAUAAAUUGCCGCU ..............................((((.((...((((......(((((....)))))...)))).)).))))((((((.......)))))). (-15.96 = -16.40 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:31 2006