| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 11,055,958 – 11,056,060 |
| Length | 102 |
| Max. P | 0.654152 |
| Location | 11,055,958 – 11,056,060 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 77.00 |
| Mean single sequence MFE | -22.75 |
| Consensus MFE | -12.23 |
| Energy contribution | -12.23 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.54 |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.654152 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11055958 102 + 22224390 ACGAA------AAACA----GGGGCUAAAGCAAACAAUUUCACUUAGUUGGGGCUAAUAAAUGUCAACGAUAAUGUUGAACAUUAUUUUUUCUUCUC--CUUUUUUUCACGGCC------ ..(((------(((.(----((((....(((...(((((......)))))..)))....(((((((((......)))).)))))..........)))--)).))))))......------ ( -23.80) >DroPse_CAF1 28180 97 + 1 GGCAACAGCCUGGAGA----AGGGAAAAAGCAAACAAUUUCACUUAGUUGAGGCUAAUAAAUGUCAACGAUAAUGUUGGACAUUAUUUUUUCUUUGC--CGCC----------------- (((....))).((..(----((..(((((((...(((((......)))))..)))....(((((((((......))).)))))).))))..)))..)--)...----------------- ( -25.80) >DroEre_CAF1 10140 100 + 1 ACGAG------AAACA----GGGCCAAAAGCAAACAAUUUCACUUAGUUGGGGCUAAUAAAUGUCAACGAUAAUGUUGAACAUUAUUUUUUCUUCUC--CUUU-UUUCACUGC------- ..(((------(((.(----(((.....(((...(((((......)))))..)))....(((((((((......)))).)))))...........))--))))-)))).....------- ( -20.20) >DroYak_CAF1 8385 107 + 1 ACGAA------AAACA----GGGGCAAAAGCAAACAAUUUCACUUAGUUGGGGCUAAUAAAUGUCAACGAUAAUGUUGAACAUUAUUUUUUCUUCUC--CUUU-UCUCACCGCCCCCUCC .....------.....----(((((...(((...(((((......)))))..)))....(((((((((......)))).))))).............--....-.......))))).... ( -24.30) >DroAna_CAF1 34640 102 + 1 ACGAA------CCACGUUGGGCGCCAAAAGCAAACAAUUUCACUUAGUUGGGGCUAAUAAAUGUCAACGAUAAUGUUGGACAUUAUUUUUUCUUCUUGCCAUUUUUUU------------ .....------........(((......(((...(((((......)))))..)))....(((((((((......))).)))))).............)))........------------ ( -18.10) >DroPer_CAF1 28474 97 + 1 GGCAACAGCCUGAAGA----AGGGAAAAAGCAAACAAUUUCACUUAGUUGAGGCUAAUAAAUGUCAACGAUAAUGUUGGACAUUAUUUUUUCUUUGC--CGCC----------------- (((((.(((((.((.(----((.((((..........)))).)))..)).)))))....(((((((((......))).)))))).........))))--)...----------------- ( -24.30) >consensus ACGAA______AAACA____GGGGCAAAAGCAAACAAUUUCACUUAGUUGGGGCUAAUAAAUGUCAACGAUAAUGUUGAACAUUAUUUUUUCUUCUC__CUUU_UUUC____________ ............................(((...(((((......)))))..)))....(((((((((......)))).))))).................................... (-12.23 = -12.23 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:30 2006