Locus 4217

Sequence ID X_DroMel_CAF1
Location 11,052,279 – 11,052,382
Length 103
Max. P 0.777387
window6931

overview

Window 1

Location 11,052,279 – 11,052,382
Length 103
Sequences 4
Columns 118
Reading direction reverse
Mean pairwise identity 79.79
Mean single sequence MFE -27.61
Consensus MFE -20.96
Energy contribution -21.02
Covariance contribution 0.06
Combinations/Pair 1.14
Mean z-score -1.71
Structure conservation index 0.76
SVM decision value 0.55
SVM RNA-class probability 0.777387
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11052279 103 - 22224390
UAAAUCAGGCGAACUUUCGGCUUAGCCGAGUUUAUCGCAGCUCAGUUAGCAUAAGUACGAAUCAGUGAGAUUUGACUAGAUUUUUUUUUUUU---UUUU------------GUGGCCA
.......(((((((..(((((...)))))))))..(((((((.....)))...(((.((((((.....)))))))))...............---...)------------)))))). ( -24.60)
>DroSec_CAF1 4474 103 - 1
UAAAUCAGGCGAACUUUCGGCUUAGUCGAGUUUAUCGCAGCUCAGUUAGCAUAAGUUCGAAUCAGUUCGAUUUGGCUAGAUUUCUGUUUUUU---UUUU------------UUGGCCA
.(((((....((((((...(((.((..(((((......)))))..)))))..))))))(((....))))))))(((((((............---...)------------)))))). ( -26.16)
>DroSim_CAF1 3271 106 - 1
UAAAUCAGGCGAACUUUCGGCUUAGUCGAGUUUAUCGCAGCUCAGUUAGCAUAAGUUCGAAUCAGUUCGAUUUGGCUAGAUUUCUGUUUUUUUUUUUUU------------UUGGCCA
.(((((....((((((...(((.((..(((((......)))))..)))))..))))))(((....))))))))(((((((..................)------------)))))). ( -25.97)
>DroEre_CAF1 6727 104 - 1
UAAAUCAGGCGAACUUUCGGCUUAGCCGAGUUUAUCGCAGCUCAGUUGGCAUAAGCUCGAUUCAG----------UUCGAUUUGGCUCAAUU----UUUGUGGCCAUGACGUAGGCCA
....(((((((((((.((((((((((((((((......)))))....))).))))).)))...))----------)))).))))).......----....(((((........))))) ( -33.70)
>consensus
UAAAUCAGGCGAACUUUCGGCUUAGCCGAGUUUAUCGCAGCUCAGUUAGCAUAAGUUCGAAUCAGUUCGAUUUGGCUAGAUUUCUGUUUUUU___UUUU____________UUGGCCA
.......(((((((((...(((.(((.(((((......))))).))))))..))))))((((((((........))).)))))...............................))). (-20.96 = -21.02 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:27 2006