Locus 4215

Sequence ID X_DroMel_CAF1
Location 11,050,702 – 11,050,804
Length 102
Max. P 0.796261
window6928

overview

Window 8

Location 11,050,702 – 11,050,804
Length 102
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 77.46
Mean single sequence MFE -39.93
Consensus MFE -21.94
Energy contribution -22.82
Covariance contribution 0.88
Combinations/Pair 1.20
Mean z-score -1.95
Structure conservation index 0.55
SVM decision value 0.60
SVM RNA-class probability 0.796261
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11050702 102 + 22224390
---------AAACAGUUGG-GAACC-----GGGGUCAGGGGUCGUUUCGGUUUCGUGAUUUC-GCCUGCAGGGUAACAUUUAAUCGAACCCUGGAGGCAGGACAUUCCCGCC--AACUUG
---------.....(.(((-(((((-----(..(((((((..((...))..))).))))..)-((((.((((((.............)))))).)))).))...)))))).)--...... ( -38.02)
>DroSec_CAF1 2947 102 + 1
---------AAACAGUUGG-GAAGC-----GGGGUCAGGGGUCGUUGCGGUACCGUGAUUUC-GCCUGCAGGGUAACAUUUAAUCGAACCCUGGAGGCAGCACAUUCCCGCC--UACUUG
---------....((.(((-(((((-----(..((((((..(((...)))..)).))))..)-((((.((((((.............)))))).)))).))...)))))).)--)..... ( -40.02)
>DroEre_CAF1 5266 110 + 1
AACU-GGACAAACAGUUGG-GAACC-----GGGGUCAGGGGUCGUUUCGGUUCCGUGAUUCC-GCCUGCAGGGUAGCAUUUAAUCGAACCCUGGAGGCAGCACAUUCCCGCC--AACUUG
((((-(......)))))((-(((..-----(((((((((..(((...)))..)).)))))))-((((.((((((.............)))))).))))......)))))...--...... ( -46.42)
>DroYak_CAF1 3340 109 + 1
--------CAAACAGUUGG-GCACUGUUGUGGGGUCAGGGGUCAUUUUGGGUGCGUGAUUCCUGCCUGCAGGGUAACAUUUAAUCGAACCCUGGAGGCAGGACAUUCCCGGC--AACUUG
--------......(((((-(....((..((.(.((((((....)))))).).))..))((((((((.((((((.............)))))).))))))))....))))))--...... ( -42.42)
>DroAna_CAF1 29405 111 + 1
GACACUCAUAAACAGGUAAAGACCU-----GAGGUCAGGGGUCUUUUCGACUGCCCGCAU-A-UCCUGCAGGGUAAUCCUUAAUCGAACCCUGGAGGCAGGACAUCGCCCCCGUAAAU--
(((.((((......(((....))))-----)))))).(((((........(((((((((.-.-...)))(((((.............))))).).)))))......))))).......-- ( -32.76)
>consensus
_________AAACAGUUGG_GAACC_____GGGGUCAGGGGUCGUUUCGGUUCCGUGAUUCC_GCCUGCAGGGUAACAUUUAAUCGAACCCUGGAGGCAGGACAUUCCCGCC__AACUUG
..............................((((...((((((.....)))))).........((((.((((((.............)))))).)))).......))))........... (-21.94 = -22.82 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:24 2006