Locus 4214

Sequence ID X_DroMel_CAF1
Location 11,049,869 – 11,049,973
Length 104
Max. P 0.934155
window6927

overview

Window 7

Location 11,049,869 – 11,049,973
Length 104
Sequences 4
Columns 116
Reading direction reverse
Mean pairwise identity 77.20
Mean single sequence MFE -24.55
Consensus MFE -18.06
Energy contribution -19.12
Covariance contribution 1.06
Combinations/Pair 1.17
Mean z-score -1.89
Structure conservation index 0.74
SVM decision value 1.23
SVM RNA-class probability 0.934155
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11049869 104 - 22224390
AGCGCUAUUUAUUUACAUAC------AGAUACGUAUUGUUUGCACAGGGAAAACUCUUUGGGCGAACUAAUGAAAUGGAAAUAG------UUGGGCAUUAGAAUAGUGCGGAUCGA
.(((((((((......((((------......)))).((((((.((((((....)))))).))))))(((((.(((.......)------))...))))))))))))))....... ( -26.40)
>DroSec_CAF1 2179 95 - 1
AGCGCUAUUUAUUUACAUAC------AGAUACGUAUUGUUUGCACAGGGAAAACUCUUUGAGCAAACUAAUGAAAUGGAAAUAG------UUGGUCAUUAGAAUAGU---------
...(((((((..........------.....(((...((((((.((((((....)))))).))))))..))).(((((..(...------.)..))))).)))))))--------- ( -19.80)
>DroEre_CAF1 4400 92 - 1
AGCGCUCUAUAUUUACAUAUACUCGUAGAUACGUAUUGUUUGCACAGAGAAAACUCUUUGAGCGAGCUAAUGAAAUGGAAAU----------------------AGUGUGCAUC--
.((((.((((((((((........)))))).(((...((((((.((((((....)))))).))))))..)))........))----------------------)).))))...-- ( -27.00)
>DroYak_CAF1 2431 110 - 1
AGCGCUAUUUAUUUACAUAC------AGAUACGUAUUGUUUGCACAGGGAAAACUCUUUGAGCGAACUAAUCAAAUGGAAAUGGUUAUGGUUGAACAUUAGACUAGUGCGGAUCGA
.((((..(((((((..((((------......)))).((((((.((((((....)))))).)))))).....)))))))..((((((((......)))..)))))))))....... ( -25.00)
>consensus
AGCGCUAUUUAUUUACAUAC______AGAUACGUAUUGUUUGCACAGGGAAAACUCUUUGAGCGAACUAAUGAAAUGGAAAUAG______UUGG_CAUUAGAAUAGUGCGGAUC__
.(((((((((...........................((((((.((((((....)))))).)))))).......((....))..................)))))))))....... (-18.06 = -19.12 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:23 2006