Locus 4212

Sequence ID X_DroMel_CAF1
Location 11,047,619 – 11,047,715
Length 96
Max. P 0.991340
window6925

overview

Window 5

Location 11,047,619 – 11,047,715
Length 96
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 72.37
Mean single sequence MFE -34.12
Consensus MFE -24.91
Energy contribution -24.80
Covariance contribution -0.11
Combinations/Pair 1.32
Mean z-score -2.12
Structure conservation index 0.73
SVM decision value 2.26
SVM RNA-class probability 0.991340
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11047619 96 + 22224390
CUUCUGGGACGGUCAACCAGUCACUUCCCCGGUAUAUCCCCGGAUGGGGGAUAUGUGGAACCCCAAUACCGCCGGCUACCAGAAUUACCAACAC------------------------CC
.(((((((((((....)).)))......(((((((((((((.....)))))))).(((....))).....)))))...))))))..........------------------------.. ( -34.80)
>DroSec_CAF1 23 96 + 1
CUUCUGGGACGGUCAACCAGUCACUUCCCCGGUGUAUCCCCAGAUGGGGGAUGCGUGGAAUCCCAAUACCUCCGGCUACCAGAAUUUCCAUCAC------------------------CC
.(((((((((((....)).)))......((((.((((((((.....)))))))).(((....)))......))))...))))))..........------------------------.. ( -34.70)
>DroSim_CAF1 21 96 + 1
AUUCUGGGACGGUCAACCAGUCACUUCCCCGGUGUAUCCCCAGAUGGGGGAUGCGUGGAAUCCCAAUACCUCCGGCUACCAGAAUUACCAUCAC------------------------CC
((((((((((((....)).)))......((((.((((((((.....)))))))).(((....)))......))))...))))))).........------------------------.. ( -35.20)
>DroEre_CAF1 2500 96 + 1
CUUCUGGGACGGUCAGCCAGUCACCUCGCCGGUAUAUCCCCAGAUGGGGGAUAUGUGGAGUCCCAAUUCCUGUGGCUACCAGCGCUACCAUCAC------------------------UC
....(((((((((.((........)).)))..(((((((((.....)))))))))....))))))......(((((.......)))))......------------------------.. ( -32.20)
>DroYak_CAF1 21 120 + 1
AUUCUGGGACGGUCAGCCAGUCACCUCGCCGGUGUAUCCCCAGAUGGGGGAUGUGUGGAAUCUCAAUACCUCCGGCUACCAGCGUUACAAUCAUCCUCAGUCCCAUACCCAUACCCAUAC
....(((((((((.((((...((((.....))))(((((((.....)))))))...(((...........))))))))))...(.......).......))))))............... ( -35.10)
>DroAna_CAF1 15344 86 + 1
AUUCUGGAAUGGCCAGCCGGUGACCUCGCCCGUCUUCCCGCAAAUGGGUGACCUGUUGAGCCCGAACUCGUCGGGCUUCCAGUGGC----------------------------------
...(((((.....((((.((((....)))).(((..((((....)))).)))..))))(((((((.....))))))))))))....---------------------------------- ( -32.70)
>consensus
AUUCUGGGACGGUCAACCAGUCACCUCCCCGGUGUAUCCCCAGAUGGGGGAUGUGUGGAAUCCCAAUACCUCCGGCUACCAGAAUUACCAUCAC________________________CC
...(((((((((....)).)))......(((((((((((((.....)))))))))(((....)))......))))...))))...................................... (-24.91 = -24.80 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:21 2006