| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 11,026,519 – 11,026,637 |
| Length | 118 |
| Max. P | 0.777235 |
| Location | 11,026,519 – 11,026,637 |
|---|---|
| Length | 118 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 78.08 |
| Mean single sequence MFE | -35.43 |
| Consensus MFE | -19.39 |
| Energy contribution | -20.45 |
| Covariance contribution | 1.06 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.96 |
| Structure conservation index | 0.55 |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.777235 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11026519 118 + 22224390 GCCAAAAGGAAAUAUCCUGCGCCUGGGACUUUUCCUCGUCGUCAGCGAAAAUAUUCGGUAGAGAAAAUUUCCCAGAGUGCGAUAAAGUCUGAACUUCUCGCAUGCUAGAAAUUUUGUC-- (((...((((((..((((......))))..))))))..(((....)))........))).((.((((((((..((.((((((..((((....)))).)))))).)).)))))))).))-- ( -33.50) >DroSec_CAF1 19002 118 + 1 GCCAAAAGGAAAUAUCCUGCGCCUGGGACUUUUCCUCGUCGUCAGCGGAAAUAUGCGAUAGAGAGAAUUUCCCAGAGUGCGAUAAAGUCUGAACUUCUCGCAUGCGAGAAAUUUUGUC-- ......((((....))))((((((((((..((..(((...(((.(((......)))))).)))..))..)))))).))))((((((((......((((((....))))))))))))))-- ( -40.60) >DroSim_CAF1 10770 118 + 1 GCCAAAAGGAAAUAUCCUGCGCCUGGGACUUUUCCUCGUCGUCAGCGGAAAUAUGCGAUAGAGAGAAUUUCCCAGAGUGCGAUAAAGUUUGAACUUCUCGCAUGCGAGAAAUUUUGUC-- ......((((....))))((((((((((..((..(((...(((.(((......)))))).)))..))..)))))).))))(((((((((......(((((....))))))))))))))-- ( -40.60) >DroEre_CAF1 13438 117 + 1 GCCA-AAGGAAAUAUCCUGCGCCUGGGACUUUUCCUCGAUGCCAGCGGAAACACUCUGCAGAGAGAAUUUCCCCGAGUGCGAUAUAGUACGCACUUCUCGCAUGCUAGAGAUUUUGUC-- ((..-.((((((..((((......))))..))))))....))..(((((.....))))).((.((((((((.....((((((...(((....)))..))))))....)))))))).))-- ( -34.60) >DroYak_CAF1 14873 118 + 1 GCGAAAAGGAAAUAUCCUGCGCCUGGGACUUUUCCACGUCGCCAGCGGAAGCAUUCUGUAGAGAGAAUUUCCCAGAGUGCGAUAUUGUCUGUACUUCUCGCAUGCUAGAGAUUUUGUC-- ((((...(((((..((((......))))..)))))...))))..((....))........((.((((((((..((.((((((....((....))...)))))).)).)))))))).))-- ( -36.80) >DroMoj_CAF1 16212 99 + 1 -----CGGCAAACAUUUCGUGCCCGGUACUUUUUUGCU--G-CUGCGAA------CAGCAGAGAAAAUAUCCCAAAGGGUAAUUU-------AUUUAUCGCAUGCUAGAACUCUUUGCUG -----(((((((.(.(((..((.(((((.((((((.((--(-(((....------))))))))))))(((((....)))))....-------...)))))...))..))).).))))))) ( -26.50) >consensus GCCAAAAGGAAAUAUCCUGCGCCUGGGACUUUUCCUCGUCGUCAGCGGAAAUAUUCGGUAGAGAGAAUUUCCCAGAGUGCGAUAAAGUCUGAACUUCUCGCAUGCUAGAAAUUUUGUC__ .......(((((..((((......))))..))))).........................((.((((((((.....((((((...(((....)))..))))))....)))))))).)).. (-19.39 = -20.45 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:06 2006